RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA637219" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA637219 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
608850 608850 PRJNA637219_S_NODE_7761_length_187_cov_1.347826_g7716_i0 PRJNA637219 7761 187 1.347826 2.52043462 Heterostelium album 2086695 Evosea other_Eukaryota 137 4.3e-28   NTclustered gi|1160575144|ref|XM_020582312.1| 670386 g7716 i0 84.286 2.19786096256684 140 22 75 0 1 140 1339 1478 Polysphondylium pallidum PN500 propionyl-CoA carboxylase (pccB), partial mRNA blastn 411 137 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
4983313 4983313 PRJNA637219_S_NODE_7204_length_192_cov_2.685315_g7159_i0 PRJNA637219 7204 192 2.685315 5.1558048 Mayorella 242540 Discosea other_Eukaryota 224 3.309999999999999e-54   NTclustered gi|33946336|gb|AY294143.1| 242541 g7159 i0 88.421 98.578125 190 17 98 3 1 189 1026 1211 Mayorella sp. JJP-2003 small subunit ribosomal RNA gene, partial sequence blastn 18927 224 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
10813030 10813030 PRJNA637219_S_NODE_17349_length_161_cov_0.910714_g17304_i0 PRJNA637219 17349 161 0.910714 1.46624954 Acanthamoeba sp. SE2_6F 507741 Discosea other_Eukaryota 254 3.42e-63   NTclustered gi|169264625|dbj|AB425949.1| 507741 g17304 i0 100 75.3850931677019 137 0 100 0 25 161 915 779 Acanthamoeba sp. SE2_6F gene for 18S ribosomal RNA, partial sequence blastn 12137 254 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp. SE2_6F
21011287 21011287 PRJNA637219_S_NODE_8157_length_184_cov_0.881481_g8112_i0 PRJNA637219 8157 184 0.881481 1.62192504 Vannella sp. GERL34 1002218 Discosea other_Eukaryota 300 5.08e-77   NTclustered gi|327391633|gb|HM363631.1| 1002218 g8112 i0 96.196 100.385869565217 184 6 100 1 1 184 1354 1536 Vannella sp. GERL34 small subunit ribosomal RNA gene, partial sequence blastn 18471 300 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERL34
22285913 22285913 PRJNA637219_S_NODE_18198_length_150_cov_5.049505_g18153_i0 PRJNA637219 18198 150 5.049505 7.5742575 Stenamoeba limacina 746894 Discosea other_Eukaryota 130 5.49e-26   NTclustered gi|292399455|gb|GU810183.1| 746894 g18153 i0 82.237 46.5733333333333 152 25 100 2 1 150 2094 2245 Stenamoeba limacina strain 4692L small subunit ribosomal RNA gene, partial sequence blastn 6986 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Stenamoeba Stenamoeba limacina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;