RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA635874 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3157879 3157879 PRJNA635874_P_NODE_21583_length_343_cov_0.855556_g21436_i0 PRJNA635874 21583 343 0.855556 2.93455708 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 263 1.3800000000000001e-65   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g21436 i0 82.781 0.880466472303207 302 44 87 8 46 343 485341 485638 Luteolibacter sp. SL250 chromosome blastn 302 263 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
3159115 3159115 PRJNA635874_P_NODE_68623_length_243_cov_0.864706_g68476_i0 PRJNA635874 68623 243 0.864706 2.10123558 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 250 7.2399999999999995e-62   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g68476 i0 85.185 1.76543209876543 243 36 100 0 1 243 2500034 2500276 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 429 250 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
5711593 5711593 PRJNA635874_P_NODE_56565_length_247_cov_0.885057_g56418_i0 PRJNA635874 56565 247 0.885057 2.18609079 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 374 4.189999999999998e-99   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g56418 i0 93.927 91.6761133603239 247 15 100 0 1 247 2448460 2448706 Luteolibacter sp. SL250 chromosome blastn 22644 374 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
8260774 8260774 PRJNA635874_P_NODE_41547_length_264_cov_1.549738_g41400_i0 PRJNA635874 41547 264 1.549738 4.0913083200000004 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 207 4.86e-49   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g41400 i0 81.226 0.988636363636364 261 45 98 3 1 259 4498856 4499114 Luteolibacter sp. SL250 chromosome blastn 261 207 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
8261409 8261409 PRJNA635874_P_NODE_67867_length_243_cov_0.905882_g67720_i0 PRJNA635874 67867 243 0.905882 2.20129326 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 300 7.08e-77   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g67720 i0 88.98 1.16049382716049 245 23 100 4 1 243 672582 672824 Luteolibacter sp. SL250 chromosome blastn 282 300 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
10812024 10812024 PRJNA635874_P_NODE_51269_length_249_cov_0.875000_g51122_i0 PRJNA635874 51269 249 0.875 2.17875 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 379 9.1e-101   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g51122 i0 94.672 0.979919678714859 244 13 98 0 6 249 2583217 2583460 Luteolibacter sp. SL250 chromosome blastn 244 379 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
10812381 10812381 PRJNA635874_P_NODE_67029_length_243_cov_0.905882_g66882_i0 PRJNA635874 67029 243 0.905882 2.20129326 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 322 1.51e-83   NTclustered gi|2874253690|emb|OY969416.1| 412056 g66882 i0 90.535 40.4485596707819 243 23 100 0 1 243 1317258 1317016 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 9829 322 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
13361895 13361895 PRJNA635874_P_NODE_48411_length_250_cov_1.644068_g48264_i0 PRJNA635874 48411 250 1.644068 4.11017 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 252 2.08e-62   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g48264 i0 84.8 1 250 38 100 0 1 250 1755538 1755289 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 250 252 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
13362188 13362188 PRJNA635874_P_NODE_61471_length_245_cov_0.895349_g61324_i0 PRJNA635874 61471 245 0.895349 2.19360505 Opitutus sp. GAS368 1882749 Bacteria Bacteria 250 7.31e-62   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g61324 i0 85.714 0.971428571428571 238 32 97 2 9 245 2302924 2303160 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 238 250 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
13362233 13362233 PRJNA635874_P_NODE_63271_length_245_cov_0.889535_g63124_i0 PRJNA635874 63271 245 0.889535 2.17936075 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 95.3 3.62e-15   NTclustered gi|2874253952|emb|OY970277.1| 412056 g63124 i0 89.474 0.310204081632653 76 6 31 2 23 97 1085158 1085084 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 76 95.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
21009755 21009755 PRJNA635874_P_NODE_35777_length_282_cov_1.368421_g35630_i0 PRJNA635874 35777 282 1.368421 3.85894722 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 322 1.8e-83   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g35630 i0 90.535 1.62765957446809 243 23 86 0 39 281 37929 38171 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 459 322 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
21010344 21010344 PRJNA635874_P_NODE_57737_length_247_cov_0.885057_g57590_i0 PRJNA635874 57737 247 0.885057 2.18609079 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 350 7.07e-92   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g57590 i0 92.276 71.0404858299595 246 19 99 0 1 246 4573390 4573635 Luteolibacter sp. SL250 chromosome blastn 17547 350 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
22284978 22284978 PRJNA635874_P_NODE_55718_length_248_cov_0.874286_g55571_i0 PRJNA635874 55718 248 0.874286 2.16822928 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 337 5.53e-88   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g55571 i0 91.429 1.12903225806452 245 21 99 0 4 248 1086390 1086146 Luteolibacter sp. SL250 chromosome blastn 280 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;