RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA635874 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8261535 8261535 PRJNA635874_P_NODE_73747_length_241_cov_0.916667_g73600_i0 PRJNA635874 73747 241 0.916667 2.20916747 Bradybaena similaris 145626 Mollusca Mollusca 58.4 4.66e-4   NTclustered gi|2913001038|dbj|AP039608.1| 145626 g73600 i0 100 1.11203319502075 31 0 13 0 49 79 47575837 47575807 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 27, sequence blastn 268 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
12087123 12087123 PRJNA635874_P_NODE_47190_length_251_cov_0.865169_g47043_i0 PRJNA635874 47190 251 0.865169 2.17157419 Saccostrea echinata 191078 Mollusca Mollusca 52.8 0.023   NTclustered gi|2628433072|ref|XM_061319694.1| 191078 g47043 i0 100 0.111553784860558 28 0 11 0 41 68 2409 2436 PREDICTED: Saccostrea echinata membrane progestin receptor beta-like (LOC133184606), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
23560779 23560779 PRJNA635874_P_NODE_67319_length_243_cov_0.905882_g67172_i0 PRJNA635874 67319 243 0.905882 2.20129326 Haliotis rubra 36100 Mollusca Mollusca 52.8 0.022   NTclustered gi|2194115985|ref|XM_046714034.1| 36100 g67172 i0 100 0.460905349794239 28 0 12 0 27 54 1323 1296 PREDICTED: Haliotis rubra putative tyrosinase-like protein tyr-3 (LOC124278317), transcript variant X2, mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rubra
24834327 24834327 PRJNA635874_P_NODE_59720_length_246_cov_0.890173_g59573_i0 PRJNA635874 59720 246 0.890173 2.18982558 Mizuhopecten yessoensis 6573 Mollusca Mollusca 58.4 4.78e-4   NTclustered gi|1207976425|ref|XM_021523468.1| 6573 g59573 i0 94.595 0.150406504065041 37 2 15 0 63 99 2933 2969 PREDICTED: Mizuhopecten yessoensis ileal sodium/bile acid cotransporter-like (LOC110466745), mRNA blastn 37 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;