RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA635874 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12087361 12087361 PRJNA635874_P_NODE_57650_length_247_cov_0.885057_g57503_i0 PRJNA635874 57650 247 0.885057 2.18609079 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 457 4.05e-124   NTclustered gi|226088597|dbj|AP009153.1| 379066 g57503 i0 100 1 247 0 100 0 1 247 937556 937802 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 247 457 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
22285180 22285180 PRJNA635874_P_NODE_64258_length_244_cov_0.900585_g64111_i0 PRJNA635874 64258 244 0.900585 2.1974274 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 307 4.25e-79   NTclustered gi|2874253978|emb|OY970303.1| 412054 g64111 i0 89.147 181.118852459016 258 12 99 4 3 244 1903658 1903915 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 44193 307 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
24833951 24833951 PRJNA635874_P_NODE_43400_length_259_cov_1.236559_g43253_i0 PRJNA635874 43400 259 1.236559 3.20268781 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 401 2.0299999999999993e-107   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g43253 i0 94.595 98.6138996138996 259 14 100 0 1 259 1678837 1678579 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 25541 401 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;