RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA635874 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12087220 12087220 PRJNA635874_P_NODE_51330_length_249_cov_0.875000_g51183_i0 PRJNA635874 51330 249 0.875 2.17875 Lytechinus pictus 7653 Echinodermata other_Eukaryota 52.8 0.023   NTclustered gi|2707365550|ref|XM_054916571.2| 7653 g51183 i0 96.875 0.1285140562249 32 0 12 1 149 179 1603 1634 PREDICTED: Lytechinus pictus uncharacterized LOC129280569 (LOC129280569), mRNA blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
24834192 24834192 PRJNA635874_P_NODE_53360_length_248_cov_1.462857_g53213_i0 PRJNA635874 53360 248 1.462857 3.62788536 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 60.2 1.34e-4   NTclustered gi|1752406228|ref|XM_792137.5| 7668 g53213 i0 89.362 1.58064516129032 47 5 19 0 101 147 265 219 PREDICTED: Strongylocentrotus purpuratus transmembrane protein 143 (LOC592624), mRNA blastn 392 60.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;