RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA635874 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5710560 5710560 PRJNA635874_P_NODE_18225_length_365_cov_1.051370_g18078_i0 PRJNA635874 18225 365 1.05137 3.8375005 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 309 1.86e-79   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g18078 i0 83.014 50.9424657534247 365 39 99 15 1 363 3665 4008 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 18594 309 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
8260000 8260000 PRJNA635874_P_NODE_14527_length_398_cov_2.584615_g14380_i0 PRJNA635874 14527 398 2.584615 10.2867677 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 490 6.82e-134   NTclustered gi|238617666|gb|FJ973412.1| 188950 g14380 i0 99.262 74.5226130653266 271 2 68 0 2 272 271 1 Bodomorpha minima strain ATCC 50339 alpha-tubulin (atub) gene, partial cds blastn 29660 490 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
23559659 23559659 PRJNA635874_P_NODE_239_length_1727_cov_2.440750_g192_i0 PRJNA635874 239 1727 2.44075 42.1517525 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 1628 0   NTclustered gi|302026154|gb|GQ377660.1| 188950 g192 i0 99.552 73.0069484655472 893 4 52 0 340 1232 1 893 Bodomorpha minima beta-tubulin (Btub) gene, partial cds blastn 126083 1628 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
24833916 24833916 PRJNA635874_P_NODE_4220_length_659_cov_2.604096_g4078_i0 PRJNA635874 4220 659 2.604096 17.16099264 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 1173 0   NTclustered gi|238617630|gb|FJ973394.1| 188950 g4078 i0 98.786 97.0440060698027 659 8 100 0 1 659 6 664 Bodomorpha minima strain ATCC 50339 actin (act) gene, partial cds blastn 63952 1173 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;