RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA635874 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3158655 3158655 PRJNA635874_P_NODE_49263_length_250_cov_0.870056_g49116_i0 PRJNA635874 49263 250 0.870056 2.17514 Arcobacter acticola 1849015 Bacteria Bacteria 357 4.28e-94   NTclustered gi|1845963640|gb|CP042652.1| 1849015 g49116 i0 92.4 4.996 250 19 100 0 1 250 599100 598851 Arcobacter acticola strain KCTC 52212 chromosome, complete genome blastn 1249 357 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter acticola
15910339 15910339 PRJNA635874_P_NODE_39613_length_270_cov_1.340102_g39466_i0 PRJNA635874 39613 270 1.340102 3.6182754 Campylobacter concisus 199 Bacteria Bacteria 52.8 0.025   NTclustered gi|1063302220|gb|CP000792.2| 360104 g39466 i0 100 0.103703703703704 28 0 10 0 4 31 1290234 1290207 Campylobacter concisus 13826 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
20280872 20280872 PRJNA635874_P_NODE_29916_length_303_cov_1.004348_g29769_i0 PRJNA635874 29916 303 1.004348 3.04317444 root 1 Root_unresolved Root_unresolved 560 3.79e-155   NTclustered gi|1226876681|gb|CP022559.1| 197 g29769 i0 100 100 303 0 100 0 1 303 698322 698020 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 30300 560 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;