RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA635874 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15910266 15910266 PRJNA635874_P_NODE_36993_length_278_cov_1.497561_g36846_i0 PRJNA635874 36993 278 1.497561 4.16321958 Bdellovibrio sp. ZAP7 2231053 Bacteria Bacteria 318 2.2899999999999995e-82   NTclustered gi|1700693790|gb|CP030082.1| 2231053 g36846 i0 87.868 0.97841726618705 272 31 97 2 2 272 810475 810745 Bdellovibrio sp. ZAP7 chromosome, complete genome blastn 272 318 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ZAP7
24834077 24834077 PRJNA635874_P_NODE_48120_length_251_cov_0.865169_g47973_i0 PRJNA635874 48120 251 0.865169 2.17157419 Pigmentibacter ruber 2683196 Bacteria Bacteria 52.8 0.023   NTclustered gi|2651759839|dbj|AP029159.1| 2683196 g47973 i0 100 0.111553784860558 28 0 11 0 144 171 859799 859772 Pigmentibacter ruber GTC16762 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter ruber
25380846 25380846 PRJNA635874_P_NODE_37340_length_277_cov_1.343137_g37193_i0 PRJNA635874 37340 277 1.343137 3.72048949 Bdellovibrio 958 Bacteria Bacteria 335 2.2599999999999993e-87   NTclustered gi|2801803968|gb|CP169237.1| 959 g37193 i0 88.686 7.65703971119134 274 31 99 0 4 277 2122284 2122557 Bdellovibrio bacteriovorus strain Bd3 chromosome, complete genome blastn 2121 335 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;