RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA635874 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
607596 607596 PRJNA635874_P_NODE_43621_length_258_cov_1.627027_g43474_i0 PRJNA635874 43621 258 1.627027 4.19772966 Coccomyxa subellipsoidea 248742 Plants Plants 292 1.27e-74   NTclustered gi|545367280|ref|XM_005648425.1| 574566 g43474 i0 87.16 81.2558139534884 257 33 99 0 1 257 466 210 Coccomyxa subellipsoidea C-169 ribosomal protein S9 component of cytosolic 80S ribosome and 40S small subunit partial mRNA blastn 20964 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
4435291 4435291 PRJNA635874_P_NODE_42244_length_262_cov_1.550265_g42097_i0 PRJNA635874 42244 262 1.550265 4.0616943 Auxenochlorella protothecoides 3075 Plants Plants 135 2.31e-27   NTclustered gi|760445578|ref|XM_011401556.1| 3075 g42097 i0 81.065 3.87786259541985 169 32 65 0 1 169 273 105 Auxenochlorella protothecoides 40S ribosomal protein S11 partial mRNA blastn 1016 135 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
4435802 4435802 PRJNA635874_P_NODE_64564_length_244_cov_0.900585_g64417_i0 PRJNA635874 64564 244 0.900585 2.1974274 Chlamydomonas reinhardtii 3055 Plants Plants 137 5.91e-28   NTclustered gi|2082248373|ref|XM_001695415.2| 3055 g64417 i0 77.866 5.09426229508197 253 35 100 17 1 244 868 628 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g284250v5), mRNA blastn 1243 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
9536641 9536641 PRJNA635874_P_NODE_65148_length_244_cov_0.900585_g65001_i0 PRJNA635874 65148 244 0.900585 2.1974274 Coccomyxa subellipsoidea 248742 Plants Plants 156 1.63e-33   NTclustered gi|545373181|ref|XM_005650924.1| 574566 g65001 i0 84.146 10.6475409836066 164 22 66 4 9 170 315 476 Coccomyxa subellipsoidea C-169 chlorophyll a/b-binding protein partial mRNA blastn 2598 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
17185335 17185335 PRJNA635874_P_NODE_34954_length_285_cov_0.853774_g34807_i0 PRJNA635874 34954 285 0.853774 2.4332559 Massjukichlorella minus 2650457 Plants Plants 460 3.69e-125   NTclustered gi|2473928430|ref|NC_072902.1| 2650457 g34807 i0 95.789 99.540350877193 285 12 100 0 1 285 37374 37658 Massjukichlorella minus clone BN2720 chloroplast, complete genome blastn 28369 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Massjukichlorella Massjukichlorella minus
21010316 21010316 PRJNA635874_P_NODE_56337_length_247_cov_0.885057_g56190_i0 PRJNA635874 56337 247 0.885057 2.18609079 Massjukichlorella minus 2650457 Plants Plants 377 3.24e-100   NTclustered gi|2473928430|ref|NC_072902.1| 2650457 g56190 i0 94.309 44.4048582995951 246 14 99 0 1 246 188875 189120 Massjukichlorella minus clone BN2720 chloroplast, complete genome blastn 10968 377 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Massjukichlorella Massjukichlorella minus
22285031 22285031 PRJNA635874_P_NODE_57938_length_247_cov_0.885057_g57791_i0 PRJNA635874 57938 247 0.885057 2.18609079 Volvox carteri 3067 Plants Plants 56.5 0.002   NTclustered gi|62751199|gb|AC156446.2| 3067 g57791 i0 100 0.121457489878543 30 0 12 0 148 177 18459 18488 Volvox carteri clone JGIAOBO-29H23, complete sequence blastn 30 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;