RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA635874" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 5 ✖

bioproject 1

  • PRJNA635874 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
607807 607807 PRJNA635874_P_NODE_51881_length_249_cov_0.875000_g51734_i0 PRJNA635874 51881 249 0.875 2.17875 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 117 7.88e-22   NTclustered gi|1958123529|gb|CP065016.1| 2026720 g51734 i0 94.667 1.32128514056225 75 4 30 0 1 75 1153431 1153357 Candidatus Saccharibacteria bacterium isolate Vibo_18-Q3-R45-57_BAT3C.117_fly chromosome, complete genome blastn 329 117 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
8260105 8260105 PRJNA635874_P_NODE_17967_length_367_cov_1.047619_g17820_i0 PRJNA635874 17967 367 1.047619 3.84476173 Candidatus Saccharibacteria bacterium TM7i 2980174 Bacteria Bacteria 207 7.03e-49   NTclustered gi|2306681518|gb|CP075337.1| 2980174 g17820 i0 78.299 0.929155313351499 341 61 90 11 13 342 274905 275243 Candidatus Saccharibacteria bacterium TM7i chromosome, complete genome blastn 341 207 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium TM7i
12086265 12086265 PRJNA635874_P_NODE_17710_length_369_cov_1.040541_g17563_i0 PRJNA635874 17710 369 1.040541 3.83959629 Candidatus Saccharibacteria bacterium TM7i 2980174 Bacteria Bacteria 429 1.39e-115   NTclustered gi|2306681518|gb|CP075337.1| 2980174 g17563 i0 87.912 137.460704607046 364 44 99 0 1 364 364845 364482 Candidatus Saccharibacteria bacterium TM7i chromosome, complete genome blastn 50723 429 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium TM7i
13362344 13362344 PRJNA635874_P_NODE_67991_length_243_cov_0.905882_g67844_i0 PRJNA635874 67991 243 0.905882 2.20129326 Candidatus Nanogingivalaceae bacterium 2725942 Bacteria Bacteria 204 5.71e-48   NTclustered gi|2070571752|gb|CP072208.2| 2725942 g67844 i0 82.684 1.90123456790123 231 38 95 2 3 232 439428 439199 MAG: Candidatus Nanogingivalaceae bacterium isolate JCVI_27_bin.3 chromosome, complete genome blastn 462 204 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae   Candidatus Nanogingivalaceae bacterium
15910728 15910728 PRJNA635874_P_NODE_54173_length_248_cov_0.880000_g54026_i0 PRJNA635874 54173 248 0.88 2.1824 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 52.8 0.022   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g54026 i0 100 0.112903225806452 28 0 11 0 214 241 508046 508019 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;