RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA635397" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA635397 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6984256 6984256 PRJNA635397_P_NODE_31566_length_282_cov_6.157895_g31112_i0 PRJNA635397 31566 282 6.157895 17.3652639 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 279 1.1e-70   NTclustered gi|2289|emb|X59936.1| 4766 g31112 i0 87.552 82.8439716312057 241 30 85 0 41 281 1 241 A.bisexualis gene for actin blastn 23362 279 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
9534610 9534610 PRJNA635397_P_NODE_8488_length_615_cov_1.952030_g8042_i0 PRJNA635397 8488 615 1.95203 12.0049845 Achlya ambisexualis 4768 SAR_Eukaryotes SAR_Eukaryotes 383 1.9e-101   NTclustered gi|22086549|gb|AF402100.1| 4768 g8042 i0 78.454 67.2617886178862 608 116 97 13 16 614 665 64 Achlya ambisexualis isolate JS854 heat shock protein Hsp90 mRNA, complete cds blastn 41366 383 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis
14634305 14634305 PRJNA635397_P_NODE_11812_length_497_cov_12.068396_g11359_i0 PRJNA635397 11812 497 12.068396 59.97992812 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.69e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g11359 i0 80.533 68.0643863179074 375 65 74 4 102 469 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;