RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA635397" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA635397 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1881749 1881749 PRJNA635397_P_NODE_19322_length_368_cov_1.603390_g18868_i0 PRJNA635397 19322 368 1.60339 5.9004752 Gilbertella persicaria 101096 Fungi Fungi 252 3.21e-62   NTclustered gi|2323722952|ref|XM_051576773.1| 101096 g18868 i0 83.456 20.5625 272 43 74 2 20 290 523 253 Gilbertella persicaria succinate dehydrogenase flavoprotein subunit 1 (B0P05DRAFT_529612), mRNA blastn 7567 252 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Choanephoraceae Gilbertella Gilbertella persicaria
6984183 6984183 PRJNA635397_P_NODE_27586_length_303_cov_2.243478_g27132_i0 PRJNA635397 27586 303 2.243478 6.79773834 Mycotypha africana 64632 Fungi Fungi 289 1.9799999999999996e-73   NTclustered gi|2432570701|ref|XM_053083359.1| 64632 g27132 i0 84.262 83.0693069306931 305 39 99 7 1 301 854 1153 Mycotypha africana V-type proton ATPase catalytic subunit A (BDF20DRAFT_907251), partial mRNA blastn 25170 289 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mycotyphaceae Mycotypha Mycotypha africana
20280256 20280256 PRJNA635397_P_NODE_47616_length_232_cov_19.943396_g47162_i0 PRJNA635397 47616 232 19.943396 46.26867872 Fungi 4751 Fungi Fungi 429 8.2e-116   NTclustered gi|658131632|emb|HF968958.1| 4874 g47162 i0 100 146.995689655172 232 0 100 0 1 232 1993 2224 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 34103 429 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;