RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA635397" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA635397 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1153759 1153759 PRJNA635397_P_NODE_40101_length_251_cov_0.876404_g39647_i0 PRJNA635397 40101 251 0.876404 2.19977404 Phaeodactylum 2849 SAR_Eukaryotes SAR_Eukaryotes 442 1.1599999999999995e-119   NTclustered gi|169639594|gb|EU432476.1| 2850 g39647 i0 98.406 6.89243027888446 251 4 100 0 1 251 3931 4181 Phaeodactylum tricornutum retrotransposon CoDi1.1, complete sequence blastn 1730 442 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
13359846 13359846 PRJNA635397_P_NODE_26811_length_308_cov_1.225532_g26357_i0 PRJNA635397 26811 308 1.225532 3.77463856 Nitzschia traheaformis 1881117 SAR_Eukaryotes SAR_Eukaryotes 87.9 7.88e-13   NTclustered gi|2073953246|gb|MW849269.1| 1881117 g26357 i0 77.326 2.47077922077922 172 23 55 7 126 295 46488 46645 Nitzschia traheaformis isolate Qingdao in China mitochondrion, complete genome blastn 761 87.9 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia traheaformis
14634978 14634978 PRJNA635397_P_NODE_48452_length_201_cov_5.039062_g47998_i0 PRJNA635397 48452 201 5.039062 10.12851462 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 189 1.28e-43   NTclustered gi|2839792214|gb|PQ512812.1| 183589 g47998 i0 83.824 41.0398009950249 204 28 100 5 1 201 4295 4094 Pseudo-nitzschia multistriata isolate CNS00142 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8249 189 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
24832279 24832279 PRJNA635397_P_NODE_44300_length_245_cov_0.901163_g43846_i0 PRJNA635397 44300 245 0.901163 2.20784935 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 241 4.400000000000001e-59   NTclustered gi|219114313|ref|XM_002176292.1| 556484 g43846 i0 100 0.530612244897959 130 0 53 0 1 130 130 1 Phaeodactylum tricornutum CCAP 1055/1 predicted protein partial mRNA blastn 130 241 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;