RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA635397" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA635397 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6257394 6257394 PRJNA635397_P_NODE_40985_length_249_cov_8.221591_g40531_i0 PRJNA635397 40985 249 8.221591 20.47176159 Eukaryota 2759 Plants Plants 459 1.1399999999999998e-124   NTclustered gi|1714003650|gb|MN243923.1| 3079 g40531 i0 100 99.6305220883534 248 0 99 0 2 249 294 47 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 24808 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
17731560 17731560 PRJNA635397_P_NODE_16394_length_406_cov_7.195195_g15940_i0 PRJNA635397 16394 406 7.195195 29.2124917 Eukaryota 2759 Plants Plants 56.5 0.003   NTclustered gi|2082247188|ref|XM_043062858.1| 3055 g15940 i0 96.97 0.435960591133005 33 1 8 0 176 208 5341 5309 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g265950v5), mRNA blastn 177 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20280183 20280183 PRJNA635397_P_NODE_24416_length_323_cov_3.384000_g23962_i0 PRJNA635397 24416 323 3.384 10.93032 Eukaryota 2759 Plants Plants 593 4.0199999999999986e-165   NTclustered gi|1714003650|gb|MN243923.1| 3079 g23962 i0 100 99.2383900928793 321 0 99 0 1 321 533 853 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 32054 593 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
24832016 24832016 PRJNA635397_P_NODE_27660_length_303_cov_1.343478_g27206_i0 PRJNA635397 27660 303 1.343478 4.07073834 Chlamydomonas reinhardtii 3055 Plants Plants 62.1 4.69e-5   NTclustered gi|2082252565|ref|XM_043065027.1| 3055 g27206 i0 100 1.09240924092409 33 0 11 0 137 169 1504 1472 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_08g370700v5), mRNA blastn 331 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;