contig_metadata
18 rows where analysis = "blastn", bioproject = "PRJNA633835" and tax_phylum = "Actinomycetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4431558 | 4431558 | PRJNA633835_S_NODE_8304_length_264_cov_1.209424_g8236_i0 | PRJNA633835 | 8304 | 264 | 1.209424 | 3.19287936 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 429 | 9.529999999999999e-116 | NTclustered | gi|2236340155|gb|CP097094.1| | 43675 | g8236 | i0 | 96.875 | 9.66287878787879 | 256 | 8 | 97 | 0 | 9 | 264 | 981554 | 981809 | MAG: Rothia mucilaginosa isolate JCVI-JB-Rm27 chromosome, complete genome | blastn | 2551 | 429 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 5707439 | 5707439 | PRJNA633835_S_NODE_5545_length_300_cov_1.418502_g5477_i0 | PRJNA633835 | 5545 | 300 | 1.418502 | 4.255506 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 532 | 8.18e-147 | NTclustered | gi|2236340155|gb|CP097094.1| | 43675 | g5477 | i0 | 98.667 | 5.75666666666667 | 300 | 4 | 100 | 0 | 1 | 300 | 2220820 | 2220521 | MAG: Rothia mucilaginosa isolate JCVI-JB-Rm27 chromosome, complete genome | blastn | 1727 | 532 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 8256964 | 8256964 | PRJNA633835_S_NODE_11107_length_245_cov_0.895349_g11039_i0 | PRJNA633835 | 11107 | 245 | 0.895349 | 2.19360505 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 431 | 2.4299999999999996e-116 | NTclustered | gi|2236340155|gb|CP097094.1| | 43675 | g11039 | i0 | 98.367 | 20.6897959183673 | 245 | 4 | 100 | 0 | 1 | 245 | 1032170 | 1032414 | MAG: Rothia mucilaginosa isolate JCVI-JB-Rm27 chromosome, complete genome | blastn | 5069 | 431 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 9532358 | 9532358 | PRJNA633835_S_NODE_7588_length_272_cov_1.155779_g7520_i0 | PRJNA633835 | 7588 | 272 | 1.155779 | 3.14371888 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 392 | 1.2899999999999997e-104 | NTclustered | gi|2894495941|gb|CP178327.1| | 43675 | g7520 | i0 | 92.963 | 9.89338235294118 | 270 | 17 | 99 | 2 | 4 | 272 | 1982871 | 1983139 | Rothia mucilaginosa strain SOSUI004 chromosome, complete genome | blastn | 2691 | 392 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 10807986 | 10807986 | PRJNA633835_S_NODE_10289_length_249_cov_0.869318_g10221_i0 | PRJNA633835 | 10289 | 249 | 0.869318 | 2.16460182 | Actinomyces oris | 544580 | Bacteria | Bacteria | 455 | 1.47e-123 | NTclustered | gi|1948687139|gb|CP066060.1| | 544580 | g10221 | i0 | 99.598 | 9.00401606425703 | 249 | 1 | 100 | 0 | 1 | 249 | 2458701 | 2458949 | Actinomyces oris strain FDAARGOS_1051 chromosome, complete genome | blastn | 2242 | 455 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Actinomycetales | Actinomycetaceae | Actinomyces | Actinomyces oris | ||
| 13358041 | 13358041 | PRJNA633835_S_NODE_8871_length_258_cov_2.318919_g8803_i0 | PRJNA633835 | 8871 | 258 | 2.318919 | 5.98281102 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 477 | 3.2699999999999985e-130 | NTclustered | gi|2894492453|gb|CP178326.1| | 43675 | g8803 | i0 | 100 | 99.5813953488372 | 258 | 0 | 100 | 0 | 1 | 258 | 56213 | 56470 | Rothia mucilaginosa strain SOSUI007 chromosome, complete genome | blastn | 25692 | 477 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 15906602 | 15906602 | PRJNA633835_S_NODE_1073_length_509_cov_6.722477_g1005_i0 | PRJNA633835 | 1073 | 509 | 6.722477 | 34.21740793 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 560 | 6.69e-155 | NTclustered | gi|283133067|dbj|AP011540.1| | 680646 | g1005 | i0 | 87.525 | 9.49115913555992 | 497 | 47 | 98 | 6 | 13 | 509 | 166696 | 167177 | Rothia mucilaginosa DY-18 DNA, complete genome | blastn | 4831 | 560 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 17181799 | 17181799 | PRJNA633835_S_NODE_5634_length_299_cov_1.022124_g5566_i0 | PRJNA633835 | 5634 | 299 | 1.022124 | 3.05615076 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 542 | 1.35e-149 | NTclustered | gi|2894495941|gb|CP178327.1| | 43675 | g5566 | i0 | 99.331 | 9.30434782608696 | 299 | 2 | 100 | 0 | 1 | 299 | 803850 | 804148 | Rothia mucilaginosa strain SOSUI004 chromosome, complete genome | blastn | 2782 | 542 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 17181800 | 17181800 | PRJNA633835_S_NODE_5974_length_293_cov_1.745455_g5906_i0 | PRJNA633835 | 5974 | 293 | 1.745455 | 5.11418315 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 536 | 6.149999999999998e-148 | NTclustered | gi|1247210625|gb|CP023510.1| | 43675 | g5906 | i0 | 99.659 | 27.6587030716724 | 293 | 1 | 100 | 0 | 1 | 293 | 1483562 | 1483270 | Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome | blastn | 8104 | 536 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 17181817 | 17181817 | PRJNA633835_S_NODE_9894_length_250_cov_1.259887_g9826_i0 | PRJNA633835 | 9894 | 250 | 1.259887 | 3.1497175 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 440 | 4.1399999999999976e-119 | NTclustered | gi|2894495941|gb|CP178327.1| | 43675 | g9826 | i0 | 98.4 | 13.072 | 250 | 4 | 100 | 0 | 1 | 250 | 1103261 | 1103012 | Rothia mucilaginosa strain SOSUI004 chromosome, complete genome | blastn | 3268 | 440 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 21006230 | 21006230 | PRJNA633835_S_NODE_3817_length_337_cov_0.875000_g3749_i0 | PRJNA633835 | 3817 | 337 | 0.875 | 2.94875 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 490 | 5.69e-134 | NTclustered | gi|2894495941|gb|CP178327.1| | 43675 | g3749 | i0 | 92.571 | 10.8813056379822 | 350 | 13 | 100 | 3 | 1 | 337 | 1797557 | 1797906 | Rothia mucilaginosa strain SOSUI004 chromosome, complete genome | blastn | 3667 | 490 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 21554163 | 21554163 | PRJNA633835_S_NODE_12117_length_241_cov_0.916667_g12049_i0 | PRJNA633835 | 12117 | 241 | 0.916667 | 2.20916747 | Rothia | 32207 | Bacteria | Bacteria | 424 | 3.99e-114 | NTclustered | gi|2894492453|gb|CP178326.1| | 43675 | g12049 | i0 | 98.34 | 10 | 241 | 4 | 100 | 0 | 1 | 241 | 1724254 | 1724494 | Rothia mucilaginosa strain SOSUI007 chromosome, complete genome | blastn | 2410 | 424 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 22829706 | 22829706 | PRJNA633835_S_NODE_4358_length_323_cov_1.552000_g4290_i0 | PRJNA633835 | 4358 | 323 | 1.552 | 5.01296 | Rothia | 32207 | Bacteria | Bacteria | 597 | 3.11e-166 | NTclustered | gi|2894495941|gb|CP178327.1| | 43675 | g4290 | i0 | 100 | 44.8204334365325 | 323 | 0 | 100 | 0 | 1 | 323 | 1937346 | 1937668 | Rothia mucilaginosa strain SOSUI004 chromosome, complete genome | blastn | 14477 | 597 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 23556398 | 23556398 | PRJNA633835_S_NODE_11679_length_243_cov_0.900000_g11611_i0 | PRJNA633835 | 11679 | 243 | 0.9 | 2.187 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 398 | 2.4399999999999997e-106 | NTclustered | gi|1928744956|gb|CP061536.1| | 43675 | g11611 | i0 | 96.296 | 8.31275720164609 | 243 | 8 | 100 | 1 | 1 | 243 | 1230234 | 1229993 | Rothia mucilaginosa strain CECT30005 chromosome | blastn | 2020 | 398 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 23556406 | 23556406 | PRJNA633835_S_NODE_12119_length_241_cov_0.916667_g12051_i0 | PRJNA633835 | 12119 | 241 | 0.916667 | 2.20916747 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 446 | 8.519999999999999e-121 | NTclustered | gi|2894495941|gb|CP178327.1| | 43675 | g12051 | i0 | 100 | 9.89626556016598 | 241 | 0 | 100 | 0 | 1 | 241 | 1316269 | 1316509 | Rothia mucilaginosa strain SOSUI004 chromosome, complete genome | blastn | 2385 | 446 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 23556436 | 23556436 | PRJNA633835_S_NODE_6239_length_290_cov_1.000000_g6171_i0 | PRJNA633835 | 6239 | 290 | 1 | 2.9 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 497 | 2.8699999999999993e-136 | NTclustered | gi|2236340155|gb|CP097094.1| | 43675 | g6171 | i0 | 97.586 | 10.1896551724138 | 290 | 7 | 100 | 0 | 1 | 290 | 2092299 | 2092010 | MAG: Rothia mucilaginosa isolate JCVI-JB-Rm27 chromosome, complete genome | blastn | 2955 | 497 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 23556438 | 23556438 | PRJNA633835_S_NODE_6679_length_283_cov_1.833333_g6611_i0 | PRJNA633835 | 6679 | 283 | 1.833333 | 5.18833239 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 479 | 1.01e-130 | NTclustered | gi|915386764|dbj|AP014938.1| | 43675 | g6611 | i0 | 97.183 | 9.09187279151944 | 284 | 7 | 100 | 1 | 1 | 283 | 1152771 | 1153054 | Rothia mucilaginosa DNA, complete genome, strain: NUM-Rm6536 | blastn | 2573 | 479 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa | ||
| 24830074 | 24830074 | PRJNA633835_S_NODE_11800_length_242_cov_1.153846_g11732_i0 | PRJNA633835 | 11800 | 242 | 1.153846 | 2.79230732 | Rothia mucilaginosa | 43675 | Bacteria | Bacteria | 425 | 1.11e-114 | NTclustered | gi|2236340155|gb|CP097094.1| | 43675 | g11732 | i0 | 98.347 | 9.99586776859504 | 242 | 4 | 100 | 0 | 1 | 242 | 26284 | 26525 | MAG: Rothia mucilaginosa isolate JCVI-JB-Rm27 chromosome, complete genome | blastn | 2419 | 425 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Micrococcaceae | Rothia | Rothia mucilaginosa |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;