RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA631796" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA631796 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1152050 1152050 PRJNA631796_P_NODE_9461_length_223_cov_2.530864_g9183_i0 PRJNA631796 9461 223 2.530864 5.64382672 Magallana 147004 Mollusca Mollusca 174 4.05e-39   NTclustered gi|18565103|dbj|AB071191.1| 29159 g9183 i0 82.5 7.3542600896861 200 33 89 2 25 223 34 232 Crassostrea gigas actin 2 mRNA for Actin 2, complete cds blastn 1640 174 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
5707057 5707057 PRJNA631796_S_NODE_133745_length_192_cov_2.946565_g133578_i0 PRJNA631796 133745 192 2.946565 5.6574048 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.017   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g133578 i0 100 0.145833333333333 28 0 15 0 26 53 24948674 24948701 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
13905974 13905974 PRJNA631796_S_NODE_132871_length_197_cov_2.977941_g132704_i0 PRJNA631796 132871 197 2.977941 5.86654377 Unionidae 47526 Mollusca Mollusca 333 5.44e-87   NTclustered gi|1815520845|gb|MK574401.1| 143297 g132704 i0 100 91.3807106598985 180 0 91 0 10 189 372 193 Unio crassus voucher biv 196/1 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 18002 333 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Unionida Unionidae Unio Unio crassus
15180460 15180460 PRJNA631796_S_NODE_67532_length_219_cov_0.835443_g67365_i0 PRJNA631796 67532 219 0.835443 1.82962017 root 1 Root_unresolved Root_unresolved 82.4 2.47e-11   NTclustered gi|920148880|dbj|AK443485.1| 88764 g67365 i0 94.444 30.8949771689498 54 1 24 2 167 219 107 55 Conus episcopatus mRNA, sequence id; Ep642-SF13 blastn 6766 82.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Conidae Conus Conus episcopatus
24829713 24829713 PRJNA631796_S_NODE_14580_length_279_cov_1.467890_g14413_i0 PRJNA631796 14580 279 1.46789 4.0954131 Bradybaena similaris 145626 Mollusca Mollusca 63.9 1.19e-5   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g14413 i0 77.778 0.996415770609319 108 21 38 2 85 191 8051560 8051665 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 278 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;