RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA631796" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA631796 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4431141 4431141 PRJNA631796_P_NODE_9304_length_225_cov_1.560976_g9026_i0 PRJNA631796 9304 225 1.560976 3.512196 uncultured Arcobacter sp. 165434 Bacteria Bacteria 128 3.23e-25   NTclustered gi|682122801|gb|KJ739652.1| 165434 g9026 i0 87.611 67.6577777777778 113 10 49 3 1 111 116 6 Uncultured Arcobacter sp. clone ONWR3-May-27-2012 23S ribosomal RNA gene, partial sequence blastn 15223 128 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter uncultured Arcobacter sp.
6255705 6255705 PRJNA631796_P_NODE_6645_length_265_cov_2.063725_g6367_i0 PRJNA631796 6645 265 2.063725 5.46887125 Helicobacter 209 Bacteria Bacteria 490 4.3299999999999986e-134   NTclustered gi|50957175|gb|AY596260.1| 213 g6367 i0 100 120.796226415094 265 0 100 0 1 265 1629 1365 Helicobacter cinaedi strain CCUG 33804 23S ribosomal RNA gene, partial sequence blastn 32011 490 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
15180424 15180424 PRJNA631796_P_NODE_7952_length_240_cov_4.167598_g7674_i0 PRJNA631796 7952 240 4.167598 10.0022352 Campylobacter 194 Bacteria Bacteria 401 1.8599999999999994e-107   NTclustered gi|1207769205|gb|MF351718.1| 199 g7674 i0 99.545 204.3125 220 1 92 0 21 240 1869 1650 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 49035 401 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
15906196 15906196 PRJNA631796_P_NODE_11713_length_206_cov_1.324138_g11435_i0 PRJNA631796 11713 206 1.324138 2.72772428 Campylobacter sp. CCS1377 3158229 Bacteria Bacteria 167 6.159999999999999e-37   NTclustered gi|2738339955|gb|CP155620.1| 3158229 g11435 i0 85.185 95.4563106796116 162 24 79 0 4 165 119648 119809 Campylobacter sp. CCS1377 chromosome, complete genome blastn 19664 167 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. CCS1377
15906235 15906235 PRJNA631796_P_NODE_4473_length_327_cov_3.424812_g4195_i0 PRJNA631796 4473 327 3.424812 11.19913524 Helicobacter pylori 210 Bacteria Bacteria 71.3 8.49e-8   NTclustered gi|2222028449|gb|CP094103.1| 210 g4195 i0 100 13.1162079510703 38 0 12 0 290 327 1292723 1292686 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 4289 71.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
21005783 21005783 PRJNA631796_P_NODE_14417_length_169_cov_4.351852_g14139_i0 PRJNA631796 14417 169 4.351852 7.35462988 Campylobacter gracilis 824 Bacteria Bacteria 307 2.73e-79   NTclustered gi|909717139|gb|CP012196.1| 824 g14139 i0 99.408 254.639053254438 169 1 100 0 1 169 500657 500489 Campylobacter gracilis strain ATCC 33236, complete genome blastn 43034 307 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter gracilis
22829454 22829454 PRJNA631796_P_NODE_13618_length_194_cov_4.255639_g13340_i0 PRJNA631796 13618 194 4.255639 8.25593966 Campylobacter 194 Bacteria Bacteria 353 4.1e-93   NTclustered gi|1207769205|gb|MF351718.1| 199 g13340 i0 99.485 231.365979381443 194 1 100 0 1 194 704 897 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 44885 353 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
22829461 22829461 PRJNA631796_P_NODE_2938_length_410_cov_6.673352_g2661_i0 PRJNA631796 2938 410 6.673352 27.3607432 Campylobacter 194 Bacteria Bacteria 752 0   NTclustered gi|1935888393|gb|CP049239.1| 199 g2661 i0 99.756 236.407317073171 410 1 100 0 1 410 1033143 1032734 Campylobacter concisus strain P3UCO1 chromosome, complete genome blastn 96927 752 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;