RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA631119 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9531750 9531750 PRJNA631119_P_NODE_30428_length_252_cov_1.720670_g30310_i0 PRJNA631119 30428 252 1.72067 4.3360884 Halomontanus rarus 3034020 Archaea Archaea 63.9 1.06e-5   NTclustered gi|2463595547|gb|CP119796.1| 3034020 g30310 i0 100 64.0595238095238 34 0 14 0 35 68 1348235 1348202 Halomontanus rarus strain TS33 chromosome, complete genome blastn 16143 63.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halomontanus Halomontanus rarus
17181242 17181242 PRJNA631119_P_NODE_32034_length_250_cov_0.870056_g31916_i0 PRJNA631119 32034 250 0.870056 2.17514 Natrinema longum 370324 Archaea Archaea 56.5 0.002   NTclustered gi|2006040148|gb|CP071463.1| 370324 g31916 i0 100 0.456 30 0 12 0 66 95 1318130 1318101 Natrinema longum strain ABH32 chromosome, complete genome blastn 114 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema longum
19729790 19729790 PRJNA631119_P_NODE_18836_length_303_cov_2.413043_g18718_i0 PRJNA631119 18836 303 2.413043 7.31152029 Thermoplasmatales archaeon 2268204 Archaea Archaea 52.8 0.028   NTclustered gi|2108144344|gb|CP070724.1| 2268204 g18718 i0 100 0.0924092409240924 28 0 9 0 18 45 1642403 1642376 MAG: Thermoplasmatales archaeon isolate bin45 chromosome blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;