RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA631119 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
603164 603164 PRJNA631119_P_NODE_2081_length_738_cov_1.927820_g1976_i0 PRJNA631119 2081 738 1.92782 14.2273116 Actomonas aquatica 2866162 Bacteria Bacteria 60.2 4.42e-4   NTclustered gi|2647674565|gb|CP139781.1| 2866162 g1976 i0 100 0.043360433604336 32 0 4 0 542 573 779082 779051 Actomonas aquatica strain WL0086 chromosome, complete genome blastn 32 60.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Actomonas Actomonas aquatica
20278454 20278454 PRJNA631119_P_NODE_9856_length_385_cov_1.474359_g9738_i0 PRJNA631119 9856 385 1.474359 5.67628215 Opitutia 414999 Bacteria Bacteria 257 7.26e-64   NTclustered gi|2626245913|emb|OY829953.1| 2026772 g9738 i0 79.888 143.155844155844 358 66 92 6 3 357 679387 679033 MAG: Opitutales bacterium isolate cf0dc631-26ae-4be7-9546-4b6096dd6533 genome assembly, chromosome: 1 blastn 55115 257 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
23555912 23555912 PRJNA631119_P_NODE_9819_length_385_cov_3.272436_g9701_i0 PRJNA631119 9819 385 3.272436 12.5988786 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 52.8 0.037   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g9701 i0 96.875 0.0831168831168831 32 0 8 1 129 159 1377541 1377510 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 32 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;