RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA631119 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4431048 4431048 PRJNA631119_P_NODE_7584_length_426_cov_3.478754_g7466_i0 PRJNA631119 7584 426 3.478754 14.81949204 Lesquereusia modesta 1260108 Tubulinea other_Eukaryota 457 7.45e-124   NTclustered gi|423291984|gb|JQ519437.1| 1260108 g7466 i0 86.223 95.7230046948357 421 58 99 0 6 426 792 372 Lesquereusia modesta clone JG10.65_a1 actin gene, partial cds blastn 40778 457 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta
23555873 23555873 PRJNA631119_P_NODE_4399_length_533_cov_3.604348_g4284_i0 PRJNA631119 4399 533 3.604348 19.21117484 Copromyxa protea 931554 Tubulinea other_Eukaryota 453 1.23e-122   NTclustered gi|508737347|dbj|AB766053.1| 931554 g4284 i0 83.232 17.2739212007505 495 81 93 2 9 502 494 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 9207 453 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;