RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA631119 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10807430 10807430 PRJNA631119_P_NODE_28709_length_258_cov_1.664865_g28591_i0 PRJNA631119 28709 258 1.664865 4.2953517 Dysidea avara 196820 Porifera other_Eukaryota 191 4.77e-44   NTclustered gi|2749546038|ref|XM_066040546.1| 196820 g28591 i0 83.663 23.2519379844961 202 33 78 0 57 258 225 426 PREDICTED: Dysidea avara ADP-ribosylation factor 1 (LOC136248752), mRNA blastn 5999 191 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara
21005680 21005680 PRJNA631119_P_NODE_3677_length_576_cov_2.099404_g3564_i0 PRJNA631119 3677 576 2.099404 12.09256704 Sycon ciliatum 27933 Porifera other_Eukaryota 80.5 2.61e-10   NTclustered gi|2732938408|ref|XM_065336333.1| 27933 g3564 i0 95.918 0.706597222222222 49 2 9 0 308 356 1693 1645 PREDICTED: Sycon ciliatum protein DD3-3-like (LOC135823487), mRNA blastn 407 80.5 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
23555749 23555749 PRJNA631119_P_NODE_1539_length_840_cov_3.388527_g1440_i0 PRJNA631119 1539 840 3.388527 28.4636268 Sycon ciliatum 27933 Porifera other_Eukaryota 372 5.71e-98   NTclustered gi|457867012|emb|HF570300.1| 27933 g1440 i0 78.596 49.5178571428571 570 116 68 6 256 822 139 705 Sycon ciliatum mRNA for 40S ribosomal protein S2/30S (rps2 gene) blastn 41595 372 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;