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contig_metadata

22 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA631119 · 22 ✖

analysis 1

  • blastn · 22 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
603163 603163 PRJNA631119_P_NODE_20621_length_293_cov_4.186364_g20503_i0 PRJNA631119 20621 293 4.186364 12.26604652 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 159 1.56e-34   NTclustered gi|813207114|ref|XM_012354790.1| 695850 g20503 i0 78.346 3.99658703071672 254 49 86 6 32 282 251 1 Saprolegnia parasitica CBS 223.65 60S ribosomal protein partial mRNA blastn 1171 159 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
603221 603221 PRJNA631119_P_NODE_3101_length_618_cov_56.460550_g2990_i0 PRJNA631119 3101 618 56.46055 348.926199 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 7.18e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g2990 i0 80.533 54.7378640776699 375 65 60 4 29 396 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
603255 603255 PRJNA631119_P_NODE_37121_length_243_cov_1.817647_g37003_i0 PRJNA631119 37121 243 1.817647 4.41688221 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 97.1 9.98e-16   NTclustered gi|813141275|ref|XM_012343514.1| 695850 g37003 i0 96.552 2.18930041152263 58 2 24 0 80 137 857 800 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 532 97.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
4430944 4430944 PRJNA631119_P_NODE_29044_length_257_cov_1.521739_g28926_i0 PRJNA631119 29044 257 1.521739 3.91086923 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|695468773|ref|XM_009541657.1| 67593 g28926 i0 100 0.272373540856031 30 0 12 0 115 144 136 107 Phytophthora sojae hypothetical protein partial mRNA blastn 70 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
5706838 5706838 PRJNA631119_P_NODE_27565_length_262_cov_6.010582_g27447_i0 PRJNA631119 27565 262 6.010582 15.74772484 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 241 4.750000000000001e-59   NTclustered gi|813199585|ref|XM_012353974.1| 695850 g27447 i0 84.553 64.824427480916 246 34 93 4 17 260 299 56 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S15a mRNA blastn 16984 241 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
8256338 8256338 PRJNA631119_P_NODE_19167_length_301_cov_2.640351_g19049_i0 PRJNA631119 19167 301 2.640351 7.94745651 Pythium sp. CHE-287 480030 SAR_Eukaryotes SAR_Eukaryotes 213 1.21e-50   NTclustered gi|158905788|gb|EU199087.1| 480030 g19049 i0 84.753 69.1328903654485 223 22 71 10 88 301 279 60 Pythium sp. CHE-287 translation elongation factor 1 alpha gene, partial cds blastn 20809 213 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. CHE-287
8256454 8256454 PRJNA631119_P_NODE_39967_length_236_cov_3.276074_g39849_i0 PRJNA631119 39967 236 3.276074 7.73153464 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 143 1.22e-29   NTclustered gi|669138647|ref|XM_008606670.1| 1156394 g39849 i0 80.208 0.813559322033898 192 36 81 2 46 236 2109 1919 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 192 143 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
9531646 9531646 PRJNA631119_P_NODE_12928_length_348_cov_1.534545_g12810_i0 PRJNA631119 12928 348 1.534545 5.3402166 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 261 5.03e-65   NTclustered gi|2795044224|ref|XM_067924377.1| 4785 g12810 i0 83.217 8.5 286 46 82 2 26 310 638 354 Phytophthora cinnamomi Carbohydrate esterase (IUM83_00594), partial mRNA blastn 2958 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9531724 9531724 PRJNA631119_P_NODE_24988_length_273_cov_1.780000_g24870_i0 PRJNA631119 24988 273 1.78 4.8594 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 267 8.219999999999999e-67   NTclustered gi|813171391|ref|XM_012349061.1| 695850 g24870 i0 86.667 20.5054945054945 240 32 88 0 6 245 860 1099 Saprolegnia parasitica CBS 223.65 adenosylhomocysteinase mRNA blastn 5598 267 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
11355229 11355229 PRJNA631119_P_NODE_2209_length_720_cov_8.057187_g2104_i0 PRJNA631119 2209 720 8.057187 58.0117464 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 477 1e-129   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g2104 i0 85.621 61.8972222222222 459 61 63 4 165 621 483 28 Pythium splendens calmodulin mRNA, complete cds blastn 44566 481 0.991683991683992 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
12082594 12082594 PRJNA631119_P_NODE_13430_length_343_cov_1.744444_g13312_i0 PRJNA631119 13430 343 1.744444 5.98344292 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 228 5.0199999999999985e-55   NTclustered gi|2795050879|ref|XM_067944282.1| 4785 g13312 i0 80.317 7.43440233236152 315 50 90 8 5 313 534 226 Phytophthora cinnamomi Mitochondrial Carrier (MC) Family (IUM83_19238), partial mRNA blastn 2550 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
12082731 12082731 PRJNA631119_P_NODE_37930_length_242_cov_2.437870_g37812_i0 PRJNA631119 37930 242 2.43787 5.8996454 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 217 7.3e-52   NTclustered gi|673019533|ref|XM_008865506.1| 157072 g37812 i0 87.368 20.4628099173554 190 22 78 2 44 232 108 296 Aphanomyces invadans hypothetical protein mRNA blastn 4952 217 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
12082733 12082733 PRJNA631119_P_NODE_38270_length_242_cov_0.911243_g38152_i0 PRJNA631119 38270 242 0.911243 2.20520806 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 143 1.2599999999999998e-29   NTclustered gi|698823182|ref|XM_009846318.1| 112090 g38152 i0 77.459 1.93388429752066 244 51 100 4 1 242 490 249 Aphanomyces astaci 60S ribosomal protein mRNA blastn 468 143 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13357409 13357409 PRJNA631119_P_NODE_21711_length_288_cov_1.888372_g21593_i0 PRJNA631119 21711 288 1.888372 5.43851136 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.23e-5   NTclustered gi|675181624|ref|XM_008901449.1| 761204 g21593 i0 95 0.375 40 2 14 0 49 88 102 141 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 108 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
14632089 14632089 PRJNA631119_P_NODE_14392_length_334_cov_3.091954_g14274_i0 PRJNA631119 14392 334 3.091954 10.32712636 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 121 8.509999999999999e-23   NTclustered gi|2794897781|ref|XM_067888306.1| 164328 g14274 i0 81.507 3.49700598802395 146 27 44 0 132 277 298 443 Phytophthora ramorum Embryonic polyadenylate-binding protein (KRP23_3453), partial mRNA blastn 1168 121 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
15906110 15906110 PRJNA631119_P_NODE_37793_length_243_cov_0.905882_g37675_i0 PRJNA631119 37793 243 0.905882 2.20129326 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 257 4.32e-64   NTclustered gi|813191598|ref|XM_012352292.1| 695850 g37675 i0 85.892 31.201646090535 241 34 99 0 2 242 518 758 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 7582 257 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
19003409 19003409 PRJNA631119_P_NODE_6595_length_451_cov_2.185185_g6477_i0 PRJNA631119 6595 451 2.185185 9.85518435 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 180 1.9199999999999998e-40   NTclustered gi|813164261|ref|XM_012347801.1| 695850 g6477 i0 79.528 32.0953436807095 254 50 56 2 189 441 611 359 Saprolegnia parasitica CBS 223.65 40S ribosomal protein mRNA blastn 14475 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
20278331 20278331 PRJNA631119_P_NODE_26396_length_267_cov_2.170103_g26278_i0 PRJNA631119 26396 267 2.170103 5.79417501 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 150 8.419999999999998e-32   NTclustered gi|301119740|ref|XM_002907552.1| 403677 g26278 i0 81.622 60.4157303370786 185 31 69 3 13 195 425 242 Phytophthora infestans T30-4 60S ribosomal protein L23a (PITG_02694), mRNA blastn 16131 150 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
22280300 22280300 PRJNA631119_P_NODE_21638_length_288_cov_15.037209_g21520_i0 PRJNA631119 21638 288 15.037209 43.30716192 Achlya bisexualis 4766 SAR_Eukaryotes SAR_Eukaryotes 254 6.8e-63   NTclustered gi|2289|emb|X59936.1| 4766 g21520 i0 87.054 75.6909722222222 224 29 78 0 1 224 224 1 A.bisexualis gene for actin blastn 21799 254 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya bisexualis
23555849 23555849 PRJNA631119_P_NODE_35419_length_245_cov_2.145349_g35301_i0 PRJNA631119 35419 245 2.145349 5.25610505 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 104 6.02e-18   NTclustered gi|673042388|ref|XM_008876933.1| 157072 g35301 i0 91.892 7.30204081632653 74 6 30 0 71 144 151 224 Aphanomyces invadans 60S ribosomal protein L39 mRNA blastn 1789 104 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
24103788 24103788 PRJNA631119_P_NODE_31679_length_250_cov_0.870056_g31561_i0 PRJNA631119 31679 250 0.870056 2.17514 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 163 1e-35   NTclustered gi|325183295|emb|FR824085.1| 890382 g31561 i0 83.333 6.536 180 27 72 2 1 180 34697 34873 Albugo laibachii Nc14, genomic contig CONTIG_40_NC14_v4_133649_231 blastn 1634 163 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
24829524 24829524 PRJNA631119_P_NODE_33520_length_248_cov_0.880000_g33402_i0 PRJNA631119 33520 248 0.88 2.1824 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 198 2.7199999999999993e-46   NTclustered gi|813178309|ref|XM_012350234.1| 695850 g33402 i0 82.895 6.49193548387097 228 31 90 7 1 224 5052 5275 Saprolegnia parasitica CBS 223.65 pre-mRNA-processing-splicing factor 8 mRNA blastn 1610 198 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;