RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA631119 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3703619 3703619 PRJNA631119_P_NODE_5243_length_496_cov_4.026005_g5125_i0 PRJNA631119 5243 496 4.026005 19.9689848 Rozella 276836 Fungi Fungi 268 4.419999999999999e-67   NTclustered gi|82398068|gb|DQ273766.1| 276837 g5125 i0 85.496 79.3991935483871 262 32 52 6 177 434 1969 1710 Rozella sp. JEL347 isolate AFTOL-ID 16 28S ribosomal RNA gene, partial sequence blastn 39382 268 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella sp. JEL347
24829539 24829539 PRJNA631119_P_NODE_35360_length_245_cov_3.825581_g35242_i0 PRJNA631119 35360 245 3.825581 9.37267345 Rozella sp. 1932610 Fungi Fungi 99 2.8e-16   NTclustered gi|2468791023|gb|OQ702923.1| 1932610 g35242 i0 90.667 31.6938775510204 75 5 30 2 166 239 4117 4044 Rozella sp. isolate PSC249 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7765 99 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;