RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_phylum = "Chlorophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA631119 · 20 ✖

analysis 1

  • blastn · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
603180 603180 PRJNA631119_P_NODE_23161_length_281_cov_2.139423_g23043_i0 PRJNA631119 23161 281 2.139423 6.01177863 Mantoniella tinhauana 3097027 Plants Plants 233 8.62e-57   NTclustered gi|2735153279|gb|CP140064.1| 3097027 g23043 i0 89.305 65.9466192170818 187 18 66 2 90 275 1560424 1560239 Mantoniella tinhauana isolate LFS chromosome 3 blastn 18531 233 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
1879356 1879356 PRJNA631119_P_NODE_20362_length_295_cov_1.337838_g20244_i0 PRJNA631119 20362 295 1.337838 3.9466221 Micromonas commoda 296587 Plants Plants 270 6.9399999999999985e-68   NTclustered gi|255077164|ref|XM_002502186.1| 296587 g20244 i0 90.64 74.2271186440678 203 19 69 0 4 206 203 1 Micromonas commoda predicted protein partial mRNA blastn 21897 270 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
4430929 4430929 PRJNA631119_P_NODE_25164_length_272_cov_2.904523_g25046_i0 PRJNA631119 25164 272 2.904523 7.90030256 Ostreococcus tauri 70448 Plants Plants 187 6.559999999999998e-43   NTclustered gi|1275575703|ref|XM_003082661.2| 70448 g25046 i0 81.545 10.6948529411765 233 38 85 5 8 238 245 16 Ostreococcus tauri Translation elongation/initiation factor/Ribosomal, beta-barrel (OT_ostta13g02260), partial mRNA blastn 2909 187 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
4430958 4430958 PRJNA631119_P_NODE_30624_length_251_cov_2.561798_g30506_i0 PRJNA631119 30624 251 2.561798 6.43011298 Chlorella variabilis 554065 Plants Plants 196 9.93e-46   NTclustered gi|552813385|ref|XM_005843877.1| 554065 g30506 i0 82.128 12.2470119521912 235 36 92 6 20 251 1107 1338 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59785) mRNA, complete cds blastn 3074 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
5706790 5706790 PRJNA631119_P_NODE_19845_length_298_cov_1.142222_g19727_i0 PRJNA631119 19845 298 1.142222 3.40382156 Chlorella variabilis 554065 Plants Plants 198 3.3599999999999993e-46   NTclustered gi|552841436|ref|XM_005850245.1| 554065 g19727 i0 81.008 52.1107382550336 258 42 86 7 31 286 291 39 Chlorella variabilis hypothetical protein (CHLNCDRAFT_30036) mRNA, complete cds blastn 15529 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
5706899 5706899 PRJNA631119_P_NODE_38145_length_242_cov_1.177515_g38027_i0 PRJNA631119 38145 242 1.177515 2.8495863 Auxenochlorella protothecoides 3075 Plants Plants 219 2.0299999999999993e-52   NTclustered gi|760449020|ref|XM_011403277.1| 3075 g38027 i0 84.305 20.8801652892562 223 35 92 0 20 242 745 523 Auxenochlorella protothecoides putative histone H2A variant 3 partial mRNA blastn 5053 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
8256355 8256355 PRJNA631119_P_NODE_23027_length_282_cov_1.468900_g22909_i0 PRJNA631119 23027 282 1.4689 4.142298 Chlamydomonas reinhardtii 3055 Plants Plants 198 3.1599999999999997e-46   NTclustered gi|2082256323|ref|XM_043066580.1| 3055 g22909 i0 80 82.6843971631206 275 49 96 6 9 280 1095 1366 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_10g427700v5), mRNA blastn 23317 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8804871 8804871 PRJNA631119_P_NODE_34427_length_247_cov_0.885057_g34309_i0 PRJNA631119 34427 247 0.885057 2.18609079 Chlorophyta 3041 Plants Plants 315 2.58e-81   NTclustered gi|1861356407|gb|MT377431.1| 51329 g34309 i0 89.796 98.2145748987854 245 25 99 0 3 247 641 397 Polytomella parva clone 0016300141 tubulin alpha chain (TBA) mRNA, complete cds; plastid blastn 24259 315 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
10807329 10807329 PRJNA631119_P_NODE_11209_length_367_cov_1.044218_g11091_i0 PRJNA631119 11209 367 1.044218 3.83228006 Coccomyxa subellipsoidea 248742 Plants Plants 220 9.029999999999999e-53   NTclustered gi|545362991|ref|XM_005646636.1| 574566 g11091 i0 78.947 7.91825613079019 323 68 88 0 1 323 160 482 Coccomyxa subellipsoidea C-169 mitogen-activated protein kinase 5 partial mRNA blastn 2906 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
10807379 10807379 PRJNA631119_P_NODE_20089_length_296_cov_2.017937_g19971_i0 PRJNA631119 20089 296 2.017937 5.97309352 Mantoniella tinhauana 3097027 Plants Plants 106 2.08e-18   NTclustered gi|2735153281|gb|CP140066.1| 3097027 g19971 i0 83.333 0.547297297297297 114 19 39 0 52 165 1029462 1029575 Mantoniella tinhauana isolate LFS chromosome 5 blastn 162 106 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
10807399 10807399 PRJNA631119_P_NODE_23749_length_279_cov_1.398058_g23631_i0 PRJNA631119 23749 279 1.398058 3.90058182 Coccomyxa subellipsoidea 248742 Plants Plants 204 6.7e-48   NTclustered gi|545363001|ref|XM_005646641.1| 574566 g23631 i0 79.856 71.2293906810036 278 56 99 0 2 279 5919 5642 Coccomyxa subellipsoidea C-169 Not1-domain-containing protein partial mRNA blastn 19873 204 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
11355378 11355378 PRJNA631119_P_NODE_8269_length_413_cov_1.385294_g8151_i0 PRJNA631119 8269 413 1.385294 5.72126422 Eukaryota 2759 Plants Plants 520 9.05e-143   NTclustered gi|969822364|gb|KT950949.1| 3130 g8151 i0 90.38 97.0532687651332 395 38 96 0 4 398 397 3 Bryopsis plumosa actin mRNA, partial cds blastn 40083 525 0.990476190476191 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis plumosa
13905852 13905852 PRJNA631119_P_NODE_37091_length_243_cov_2.264706_g36973_i0 PRJNA631119 37091 243 2.264706 5.50323558 Chlorophyta 3041 Plants Plants 150 7.55e-32   NTclustered gi|255078525|ref|XM_002502797.1| 296587 g36973 i0 79.812 32.0123456790123 213 37 86 6 22 231 467 258 Micromonas commoda translation elongation factor EF-1alpha/Tu (TEF1.1), mRNA blastn 7779 150 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
14632101 14632101 PRJNA631119_P_NODE_16592_length_318_cov_1.179592_g16474_i0 PRJNA631119 16592 318 1.179592 3.75110256 Chlamydomonas reinhardtii 3055 Plants Plants 178 4.71e-40   NTclustered gi|2082237330|ref|XM_001689650.2| 3055 g16474 i0 81.364 49.1666666666667 220 39 69 2 68 286 2299 2081 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g042750v5), mRNA blastn 15635 178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17181259 17181259 PRJNA631119_P_NODE_35094_length_246_cov_0.890173_g34976_i0 PRJNA631119 35094 246 0.890173 2.18982558 Chlamydomonas reinhardtii 3055 Plants Plants 217 7.449999999999999e-52   NTclustered gi|14970741|emb|AJ304836.1| 3055 g34976 i0 84.234 44.4512195121951 222 35 90 0 24 245 1689 1468 Chlamydomonas reinhardtii mRNA for proton-translocating inorganic pyrophosphatase (vppa gene) blastn 10935 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19729779 19729779 PRJNA631119_P_NODE_16396_length_319_cov_1.378049_g16278_i0 PRJNA631119 16396 319 1.378049 4.39597631 Mantoniella tinhauana 3097027 Plants Plants 318 2.67e-82   NTclustered gi|2735153287|gb|CP140072.1| 3097027 g16278 i0 85.906 89.2978056426332 298 42 93 0 22 319 501458 501161 Mantoniella tinhauana isolate LFS chromosome 11 blastn 28486 318 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
21005608 21005608 PRJNA631119_P_NODE_22057_length_286_cov_3.586854_g21939_i0 PRJNA631119 22057 286 3.586854 10.25840244 Chlamydomonas reinhardtii 3055 Plants Plants 183 8.98e-42   NTclustered gi|2082263712|ref|XM_043069564.1| 3055 g21939 i0 82.407 3.48251748251748 216 32 74 6 34 246 1027 815 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_13g580900v5), mRNA blastn 996 183 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
21005615 21005615 PRJNA631119_P_NODE_23617_length_279_cov_2.373786_g23499_i0 PRJNA631119 23617 279 2.373786 6.62286294 Chlamydomonas incerta 51695 Plants Plants 165 3.16e-36   NTclustered gi|74272606|gb|DQ122868.1| 51695 g23499 i0 77.695 3.67025089605735 269 60 96 0 3 271 602 334 Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds blastn 1024 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
22280416 22280416 PRJNA631119_P_NODE_7798_length_422_cov_2.381089_g7680_i0 PRJNA631119 7798 422 2.381089 10.04819558 Chlamydomonas sp. ICE-L 309537 Plants Plants 198 4.929999999999999e-46   NTclustered gi|1433048021|gb|MF780877.1| 309537 g7680 i0 79.514 48.0568720379147 288 51 67 7 2 285 1402 1685 Chlamydomonas sp. ICE-L heat shock protein 70A (HSP70A) mRNA, partial cds blastn 20280 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. ICE-L
23555869 23555869 PRJNA631119_P_NODE_40799_length_226_cov_4.549020_g40681_i0 PRJNA631119 40799 226 4.54902 10.2807852 Micromonas pusilla 38833 Plants Plants 128 3.25e-25   NTclustered gi|303271766|ref|XM_003055199.1| 564608 g40681 i0 82.237 3.7787610619469 152 23 66 4 51 200 184 35 Micromonas pusilla CCMP1545 uncharacterized protein (MICPUCDRAFT_37283), mRNA blastn 854 128 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;