RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA631119" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA631119 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2427055 2427055 PRJNA631119_P_NODE_17402_length_312_cov_2.723849_g17284_i0 PRJNA631119 17402 312 2.723849 8.49840888 root 1 Root_unresolved Root_unresolved 575 1.3999999999999999e-159   NTclustered gi|588284496|gb|KF951520.1| 1211 g17284 i0 100 94.0160256410256 311 0 99 0 2 312 378 68 Uncultured cyanobacterium clone PS41 16S ribosomal RNA gene, partial sequence blastn 29333 575 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
4431004 4431004 PRJNA631119_P_NODE_37844_length_243_cov_0.905882_g37726_i0 PRJNA631119 37844 243 0.905882 2.20129326 uncultured cyanobacterium 1211 Bacteria Bacteria 89.8 1.67e-13   NTclustered gi|2874253827|emb|OY969811.1| 1211 g37726 i0 78.986 0.567901234567901 138 23 56 6 109 243 4082958 4083092 MAG: uncultured cyanobacterium isolate MFD02832.bin.c.1 genome assembly, chromosome: 1 blastn 138 89.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
10807479 10807479 PRJNA631119_P_NODE_369_length_1428_cov_17.522509_g333_i0 PRJNA631119 369 1428 17.522509 250.22142852 Stanieria cyanosphaera 102116 Bacteria Bacteria 640 2.4599999999999997e-178   NTclustered gi|17976754|emb|AJ252121.1| 111780 g333 i0 79.82 14.6379551820728 887 172 62 6 286 1167 885 1 Dermocarpa sp. strain PCC 7437 partial gap gene for NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) blastn 20903 640 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Pleurocapsales Dermocarpellaceae Stanieria Stanieria cyanosphaera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;