RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA630877" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630877 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
603073 603073 PRJNA630877_S_NODE_131761_length_175_cov_3.201493_g112624_i0 PRJNA630877 131761 175 3.201493 5.60261275 Pedosphaera parvula 1032527 Bacteria Bacteria 230 6.349999999999998e-56   NTclustered gi|183579829|emb|AM905426.1| 320771 g112624 i0 90.341 97.9428571428571 176 15 100 2 1 175 1509 1683 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 17140 230 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
1151757 1151757 PRJNA630877_S_NODE_76201_length_313_cov_3.617647_g57064_i0 PRJNA630877 76201 313 3.617647 11.32323511 Bacteria 2 Bacteria Bacteria 444 4.13e-120   NTclustered gi|2874253779|emb|OY969763.1| 412056 g57064 i0 92.308 153.702875399361 312 24 99 0 1 312 3831045 3830734 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 48109 444 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
5706726 5706726 PRJNA630877_S_NODE_159765_length_150_cov_1.990826_g140628_i0 PRJNA630877 159765 150 1.990826 2.986239 Pedosphaera parvula 1032527 Bacteria Bacteria 213 5.3e-51   NTclustered gi|183579829|emb|AM905426.1| 320771 g140628 i0 92.105 107.373333333333 152 10 100 2 1 150 1868 1717 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 16106 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
12082566 12082566 PRJNA630877_S_NODE_45010_length_660_cov_13.894992_g27208_i0 PRJNA630877 45010 660 13.894992 91.7069472 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 1208 0   NTclustered gi|2874254019|emb|OY970344.1| 412056 g27208 i0 99.697 105.922727272727 660 2 100 0 1 660 736430 737089 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 69909 1208 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
19729746 19729746 PRJNA630877_S_NODE_78316_length_302_cov_6.720307_g59179_i0 PRJNA630877 78316 302 6.720307 20.29532714 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 475 1.4099999999999997e-129   NTclustered gi|389545847|gb|JQ400775.1| 156588 g59179 i0 95.05 102.506622516556 303 13 100 2 1 302 330 29 Uncultured Verrucomicrobia bacterium clone CNY_00669 16S ribosomal RNA gene, partial sequence blastn 30957 475 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
21005521 21005521 PRJNA630877_S_NODE_53477_length_517_cov_9.060924_g34601_i0 PRJNA630877 53477 517 9.060924 46.84497708 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 845 0   NTclustered gi|2874254019|emb|OY970344.1| 412056 g34601 i0 96.132 171.810444874275 517 20 100 0 1 517 737542 737026 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 88826 845 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
22280229 22280229 PRJNA630877_S_NODE_13918_length_1840_cov_7.908838_g7582_i0 PRJNA630877 13918 1840 7.908838 145.5226192 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 1947 0   NTclustered gi|226525339|gb|FJ872375.1| 156588 g7582 i0 85.961 191.945108695652 1852 224 100 31 1 1840 26740 28567 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 353179 1947 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
22280233 22280233 PRJNA630877_S_NODE_44918_length_662_cov_13.652174_g27139_i0 PRJNA630877 44918 662 13.652174 90.37739188 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 948 0   NTclustered gi|2874254019|emb|OY970344.1| 412056 g27139 i0 92.62 105.519637462236 664 41 99 8 1 660 736430 737089 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 69854 948 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
22280246 22280246 PRJNA630877_S_NODE_98758_length_230_cov_1.873016_g79621_i0 PRJNA630877 98758 230 1.873016 4.3079368 Luteolibacter sp. LG18 2819286 Bacteria Bacteria 54.7 0.006   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g79621 i0 92.308 1.26086956521739 39 2 17 1 147 185 1050321 1050284 Luteolibacter sp. LG18 DNA, complete genome blastn 290 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
24829372 24829372 PRJNA630877_S_NODE_116540_length_195_cov_1.707792_g97403_i0 PRJNA630877 116540 195 1.707792 3.3301944 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 243 9.32e-60   NTclustered gi|2874253779|emb|OY969763.1| 412056 g97403 i0 89.34 83.425641025641 197 16 100 5 1 195 3833222 3833415 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 16268 243 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
24829381 24829381 PRJNA630877_S_NODE_37100_length_839_cov_3.810777_g21304_i0 PRJNA630877 37100 839 3.810777 31.97241903 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 1066 0   NTclustered gi|2874253690|emb|OY969416.1| 412056 g21304 i0 89.94 131.07747318236 835 73 99 8 11 839 1316393 1315564 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 109974 1066 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;