RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA630877" and tax_phylum = "Lenarviricota"

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tax_superkingdom 1

tax_phylum 1

  • Lenarviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA630877 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
603085 603085 PRJNA630877_S_NODE_74721_length_322_cov_1.658363_g55584_i0 PRJNA630877 74721 322 1.658363 5.33992886 Sunflower rust-associated mitovirus 1 2761498 Viruses Viruses 263 1.28e-65   NTclustered gi|1886953899|gb|MT860451.1| 2761498 g55584 i0 81.595 1.01242236024845 326 52 100 6 1 322 588 909 Sunflower rust-associated mitovirus 1 isolate sunflower_SDSU RNA-dependent RNA polymerase gene, partial cds blastn 326 263 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sunflower rust-associated mitovirus 1
13357326 13357326 PRJNA630877_S_NODE_72911_length_333_cov_1.304795_g53774_i0 PRJNA630877 72911 333 1.304795 4.34496735 Sunflower rust-associated mitovirus 1 2761498 Viruses Viruses 287 7.9e-73   NTclustered gi|1886953899|gb|MT860451.1| 2761498 g53774 i0 83.548 0.930930930930931 310 47 92 3 3 310 1685 1378 Sunflower rust-associated mitovirus 1 isolate sunflower_SDSU RNA-dependent RNA polymerase gene, partial cds blastn 310 287 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sunflower rust-associated mitovirus 1
18455175 18455175 PRJNA630877_S_NODE_114515_length_198_cov_2.216561_g95378_i0 PRJNA630877 114515 198 2.216561 4.38879078 Sunflower rust-associated mitovirus 1 2761498 Viruses Viruses 154 4.5700000000000005e-33   NTclustered gi|1886953899|gb|MT860451.1| 2761498 g95378 i0 85.235 0.752525252525252 149 22 75 0 21 169 1925 1777 Sunflower rust-associated mitovirus 1 isolate sunflower_SDSU RNA-dependent RNA polymerase gene, partial cds blastn 149 154 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sunflower rust-associated mitovirus 1
18455186 18455186 PRJNA630877_S_NODE_75595_length_317_cov_1.576087_g56458_i0 PRJNA630877 75595 317 1.576087 4.99619579 Sunflower rust-associated mitovirus 1 2761498 Viruses Viruses 224 5.949999999999999e-54   NTclustered gi|1886953899|gb|MT860451.1| 2761498 g56458 i0 79.56 1.00315457413249 318 61 99 3 1 316 1004 1319 Sunflower rust-associated mitovirus 1 isolate sunflower_SDSU RNA-dependent RNA polymerase gene, partial cds blastn 318 224 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Sunflower rust-associated mitovirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;