RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA630877" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA630877 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1879277 1879277 PRJNA630877_S_NODE_106822_length_212_cov_2.345029_g87685_i0 PRJNA630877 106822 212 2.345029 4.97146148 Prasiola crispa 173492 Plants Plants 291 3.63e-74   NTclustered gi|806639636|gb|KR017749.1| 173492 g87685 i0 94.241 126.849056603774 191 9 90 2 22 211 751 940 Prasiola crispa clone Contig2 chloroplast sequence blastn 26892 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiola Prasiola crispa
3154000 3154000 PRJNA630877_S_NODE_94843_length_240_cov_3.698492_g75706_i0 PRJNA630877 94843 240 3.698492 8.8763808 Pseudochlorella signiensis 173497 Plants Plants 333 6.88e-87   NTclustered gi|725650714|ref|NC_025529.1| 173497 g75706 i0 94.444 109.975 216 12 90 0 1 216 150054 150269 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 26394 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
8256283 8256283 PRJNA630877_S_NODE_74487_length_323_cov_2.684397_g55350_i0 PRJNA630877 74487 323 2.684397 8.67060231 Chloroidium ellipsoideum 63676 Plants Plants 361 4.4399999999999997e-95   NTclustered gi|294358549|gb|GU732422.1| 63676 g55350 i0 87.037 92.9349845201238 324 37 100 5 1 323 291 610 Pseudochlorella sp. CCAP 211/1A isolate YSR03 28S ribosomal RNA gene, partial sequence blastn 30018 361 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
10080212 10080212 PRJNA630877_S_NODE_150708_length_157_cov_3.568966_g131571_i0 PRJNA630877 150708 157 3.568966 5.60327662 Trebouxiophyceae 75966 Plants Plants 235 1.2e-57   NTclustered gi|746948124|ref|NC_025531.1| 33092 g131571 i0 94.156 128.03821656051 154 9 98 0 4 157 145895 146048 Koliella longiseta culture-collection UTEX:339 chloroplast, complete genome blastn 20102 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
11355112 11355112 PRJNA630877_S_NODE_104429_length_217_cov_2.278409_g85292_i0 PRJNA630877 104429 217 2.278409 4.94414753 Trebouxiophyceae 75966 Plants Plants 401 1.6499999999999994e-107   NTclustered gi|359385262|emb|FR865676.1| 3082 g85292 i0 100 100.004608294931 217 0 100 0 1 217 275 59 'Chlorella' saccharophila genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 211/57 blastn 21701 401 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
11355117 11355117 PRJNA630877_S_NODE_122089_length_187_cov_1.931507_g102952_i0 PRJNA630877 122089 187 1.931507 3.61191809 Trebouxiophyceae 75966 Plants Plants 324 3.07e-84   NTclustered gi|371782093|emb|HE610125.1| 37433 g102952 i0 97.861 100.631016042781 187 4 100 0 1 187 4509 4695 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 18818 324 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
17181113 17181113 PRJNA630877_S_NODE_102454_length_221_cov_4.750000_g83317_i0 PRJNA630877 102454 221 4.75 10.4975 Stichococcus sp. 29647 Plants Plants 409 1.0100000000000001e-109   NTclustered gi|1518373087|gb|MK201750.1| 29647 g83317 i0 100 100.16742081448 221 0 100 0 1 221 1014 794 Stichococcus sp. strain KZ-5-1-1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22137 409 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
22829176 22829176 PRJNA630877_S_NODE_101678_length_223_cov_1.873626_g82541_i0 PRJNA630877 101678 223 1.873626 4.17818598 Chloroidium 1034479 Plants Plants 385 1.72e-102   NTclustered gi|1169296931|gb|KY364701.1| 63676 g82541 i0 97.758 100.013452914798 223 5 100 0 1 223 3894 4116 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22303 385 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
24829383 24829383 PRJNA630877_S_NODE_90860_length_252_cov_3.672986_g71723_i0 PRJNA630877 90860 252 3.672986 9.25592472 Stichococcus bacillaris 37433 Plants Plants 220 5.919999999999999e-53   NTclustered gi|371782093|emb|HE610125.1| 37433 g71723 i0 97.656 7.53968253968254 128 3 51 0 1 128 7055 7182 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 1900 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;