RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA630162" and tax_phylum = "candidate division WWE3"

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tax_superkingdom 1

tax_phylum 1

  • candidate division WWE3 · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA630162 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21004876 21004876 PRJNA630162_P_NODE_58637_length_230_cov_2.801105_g57114_i0 PRJNA630162 58637 230 2.801105 6.4425415 candidate division WWE3 bacterium RAAC2_WWE3_1 1394710 Bacteria Bacteria 171 5.43e-38   NTclustered gi|662020080|ref|NR_121967.1| 1394710 g57114 i0 85.207 98.7434782608696 169 22 73 3 4 171 1243 1077 Candidate division WWE3 bacterium RAAC2_WWE3_1 23S ribosomal RNA gene, complete sequence blastn 22711 171 1 Bacteria Bacteria candidate phyla   candidate division WWE3         candidate division WWE3 bacterium RAAC2_WWE3_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;