RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA630162" and tax_phylum = "Placozoa"

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tax_superkingdom 1

tax_phylum 1

  • Placozoa · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19728421 19728421 PRJNA630162_P_NODE_153576_length_163_cov_3.877193_g152053_i0 PRJNA630162 153576 163 3.877193 6.31982459 Trichoplax sp. H4 287891 Placozoa other_Eukaryota 196 5.93e-46   NTclustered gi|50956856|gb|AY652585.1| 287891 g152053 i0 90.667 92.0245398773006 150 10 92 2 9 158 1131 986 Trichoplax sp. H4 28S ribosomal RNA gene, partial sequence blastn 15000 196 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax sp. H4
19729421 19729421 PRJNA630162_P_NODE_94476_length_189_cov_1.371429_g92953_i0 PRJNA630162 94476 189 1.371429 2.59200081 Polyplacotoma mediterranea 2283839 Placozoa other_Eukaryota 75 3.46e-9   NTclustered gi|1610627156|ref|NC_041549.1| 2283839 g92953 i0 93.878 21.005291005291 49 3 26 0 2 50 17272 17320 Polyplacotoma mediterranea clone Alassio mitochondrion, complete genome blastn 3970 75 1 Eukaryota Opisthokonta Metazoa Placozoa       Polyplacotoma Polyplacotoma mediterranea
25377486 25377486 PRJNA630162_P_NODE_107900_length_181_cov_1.325758_g106377_i0 PRJNA630162 107900 181 1.325758 2.39962198 Trichoplax 10227 Placozoa other_Eukaryota 75 3.28e-9   NTclustered gi|34495333|gb|AY303975.1| 10228 g106377 i0 85.714 4.48618784530387 77 3 43 6 72 148 1765 1697 Trichoplax adhaerens 28S ribosomal RNA gene, partial sequence blastn 812 75 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;