RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA630162" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1151296 1151296 PRJNA630162_P_NODE_162941_length_161_cov_2.464286_g161418_i0 PRJNA630162 162941 161 2.464286 3.96750046 Nitrospinaceae 407032 Bacteria Bacteria 73.1 1.03e-8   NTclustered gi|2427816174|emb|OX336137.1| 1323948 g161418 i0 81.609 1.08074534161491 87 16 54 0 5 91 1937163 1937077 Nitrospina watsonii strain 347 genome assembly, chromosome: NSPWAT blastn 174 73.1 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina watsonii
13356989 13356989 PRJNA630162_P_NODE_91911_length_190_cov_3.439716_g90388_i0 PRJNA630162 91911 190 3.439716 6.5354604 Nitrospina watsonii 1323948 Bacteria Bacteria 71.3 4.51e-8   NTclustered gi|2427816174|emb|OX336137.1| 1323948 g90388 i0 86.364 0.347368421052632 66 8 35 1 125 190 1935382 1935446 Nitrospina watsonii strain 347 genome assembly, chromosome: NSPWAT blastn 66 71.3 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina watsonii
15904426 15904426 PRJNA630162_P_NODE_120813_length_174_cov_1.440000_g119290_i0 PRJNA630162 120813 174 1.44 2.5056 Candidatus Nitrohelix vancouverensis 2705534 Bacteria Bacteria 115 1.84e-21   NTclustered gi|1938442527|gb|CP048620.1| 2705534 g119290 i0 79.651 24.5689655172414 172 25 97 10 1 168 2188086 2188251 MAG: Candidatus Nitrohelix vancouverensis isolate VA-1 chromosome blastn 4275 115 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitrohelix Candidatus Nitrohelix vancouverensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;