RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA630162" and tax_phylum = "Ctenophora"

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tax_superkingdom 1

tax_phylum 1

  • Ctenophora · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6255198 6255198 PRJNA630162_P_NODE_51105_length_246_cov_9.512690_g49582_i0 PRJNA630162 51105 246 9.51269 23.4012174 Euplokamis 1128080 Ctenophora other_Eukaryota 97.1 1.01e-15   NTclustered gi|2742502521|gb|PP905523.1| 1403701 g49582 i0 91.549 21.6422764227642 71 5 28 1 171 240 5955 5885 Euplokamis dunlapae isolate SRR3048351 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5324 97.1 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cydippida Euplokamidae Euplokamis Euplokamis dunlapae
15179473 15179473 PRJNA630162_P_NODE_100072_length_185_cov_3.404412_g98549_i0 PRJNA630162 100072 185 3.404412 6.2981622 Ctenophora 10197 Ctenophora other_Eukaryota 82.4 2.01e-11   NTclustered gi|15208482|gb|AY026369.1| 10201 g98549 i0 97.872 25.7945945945946 47 1 25 0 138 184 2656 2702 Beroe ovata 28S large subunit ribosomal RNA gene, partial sequence blastn 4772 82.4 1 Eukaryota Opisthokonta Metazoa Ctenophora Nuda Beroida Beroidae Beroe Beroe ovata
16454354 16454354 PRJNA630162_P_NODE_75053_length_207_cov_5.708861_g73530_i0 PRJNA630162 75053 207 5.708861 11.81734227 Opisthokonta 33154 Ctenophora other_Eukaryota 63.9 8.37e-6   NTclustered gi|15208491|gb|AY026378.1| 34499 g73530 i0 95.122 19.9903381642512 41 1 19 1 168 207 2240 2280 Pleurobrachia bachei 28S large subunit ribosomal RNA gene, partial sequence blastn 4138 63.9 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Cydippida Pleurobrachiidae Pleurobrachia Pleurobrachia bachei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;