RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA630162" and tax_phylum = "Candidatus Poribacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Poribacteria · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA630162 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6254813 6254813 PRJNA630162_P_NODE_114305_length_177_cov_2.257812_g112782_i0 PRJNA630162 114305 177 2.257812 3.99632724 Pseudomonadati 3379134 Bacteria Bacteria 165 1.84e-36   NTclustered gi|2621704419|emb|OY761015.1| 2026781 g112782 i0 87.413 231.542372881356 143 18 81 0 9 151 1155011 1155153 MAG: Candidatus Poribacteria bacterium isolate b26c8cc1-2726-459c-8d02-9adedbaa8fd6 genome assembly, chromosome: 2 blastn 40983 165 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
9530388 9530388 PRJNA630162_P_NODE_162388_length_161_cov_8.053571_g160865_i0 PRJNA630162 162388 161 8.053571 12.96624931 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 87.9 3.67e-13   NTclustered gi|2621705098|emb|OY763324.1| 2026781 g160865 i0 84.444 50.304347826087 90 12 76 2 68 155 2334290 2334379 MAG: Candidatus Poribacteria bacterium isolate 3d2a48e4-3859-4b6e-83ef-b4ffa18775ef genome assembly, chromosome: 1 blastn 8099 87.9 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;