RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA630162" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5705184 5705184 PRJNA630162_P_NODE_127925_length_170_cov_2.322314_g126402_i0 PRJNA630162 127925 170 2.322314 3.9479338 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 100 5.01e-17   NTclustered gi|82523633|emb|AJ937675.1| 199737 g126402 i0 78.125 1.82941176470588 160 33 94 2 2 161 3442 3285 Uncultured candidate division WS3 bacterium 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), clone b1bcf1.1.f04.rrna.clone7 blastn 311 100 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
6254961 6254961 PRJNA630162_P_NODE_154245_length_163_cov_2.140351_g152722_i0 PRJNA630162 154245 163 2.140351 3.48877213 Bacteria 2 Bacteria Bacteria 52.8 0.014   NTclustered gi|2531976039|emb|OY282377.1| 199737 g152722 i0 100 0.687116564417178 28 0 17 0 133 160 3966802 3966775 MAG: uncultured Latescibacteria bacterium genome assembly, chromosome: 1 blastn 112 52.8 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
7529425 7529425 PRJNA630162_P_NODE_67566_length_215_cov_2.542169_g66043_i0 PRJNA630162 67566 215 2.542169 5.46566335 Bacteria 2 Bacteria Bacteria 143 1.09e-29   NTclustered gi|2531976039|emb|OY282377.1| 199737 g66043 i0 81.111 129.390697674419 180 32 83 2 19 197 3965543 3965365 MAG: uncultured Latescibacteria bacterium genome assembly, chromosome: 1 blastn 27819 143 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;