RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA630162" and tax_clade = "sulfur-oxidizing symbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA630162 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19003098 19003098 PRJNA630162_P_NODE_89295_length_192_cov_1.979021_g87772_i0 PRJNA630162 89295 192 1.979021 3.79972032 Arenicella 904708 Bacteria Bacteria 102 1.62e-17   NTclustered gi|166797427|gb|EU403444.1| 500166 g87772 i0 78.035 66.4739583333333 173 31 88 5 4 171 898 1068 Vesicomya sp. 'Mid-Atlantic Ridge' endosymbiont isolate 5 23S ribosomal RNA gene, partial sequence blastn 12763 102 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Vesicomya sp. 'Mid-Atlantic Ridge' endosymbiont
22828516 22828516 PRJNA630162_P_NODE_109438_length_180_cov_1.496183_g107915_i0 PRJNA630162 109438 180 1.496183 2.6931294 Sedimenticolaceae 3067276 Bacteria Bacteria 134 5.3e-27   NTclustered gi|2666924061|gb|CP099567.1| 2687299 g107915 i0 87.826 185.983333333333 115 13 64 1 59 173 3176785 3176898 Candidatus Vondammii sp. HM_W22 chromosome, complete genome blastn 33477 134 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria     Candidatus Vondammii Candidatus Vondammii sp. HM_W22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;