RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA627467" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA627467 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1150898 1150898 PRJNA627467_P_NODE_4421_length_316_cov_1.749064_g4353_i0 PRJNA627467 4421 316 1.749064 5.52704224 Candidatus Moanibacter 2480624 Bacteria Bacteria 145 4.75e-30   NTclustered gi|2225500096|gb|CP095464.1| 2026799 g4353 i0 95.604 18.6708860759494 91 2 28 1 222 310 594141 594051 MAG: Verrucomicrobia bacterium isolate LL51 chromosome, complete genome blastn 5900 145 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
5702714 5702714 PRJNA627467_P_NODE_12205_length_180_cov_2.259542_g12136_i0 PRJNA627467 12205 180 2.259542 4.0671756 Fontisphaera persica 2974023 Bacteria Bacteria 281 1.79e-71   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g12136 i0 95.48 232.361111111111 177 7 98 1 5 180 3861932 3861756 Fontisphaera persica strain B-154 chromosome, complete genome blastn 41825 281 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
6977659 6977659 PRJNA627467_P_NODE_20926_length_154_cov_3.704762_g20857_i0 PRJNA627467 20926 154 3.704762 5.70533348 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 191 2.57e-44   NTclustered gi|2518556548|emb|OX638380.1| 412056 g20857 i0 88.961 99.7012987012987 154 17 100 0 1 154 3920482 3920635 MAG: uncultured Verrucomicrobiae bacterium isolate efd5e50e-5b6a-4a0f-a0a2-e496bae301b3 genome assembly, chromosome: 1 blastn 15354 191 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
10803404 10803404 PRJNA627467_P_NODE_2449_length_316_cov_2.614232_g2381_i0 PRJNA627467 2449 316 2.614232 8.26097312 Lacunisphaera limnophila 1838286 Bacteria Bacteria 71.3 8.17e-8   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g2381 i0 85.333 0.569620253164557 75 3 22 5 25 95 4019792 4019722 Lacunisphaera limnophila strain IG16b, complete genome blastn 180 71.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
14628043 14628043 PRJNA627467_P_NODE_12892_length_178_cov_1.550388_g12823_i0 PRJNA627467 12892 178 1.550388 2.75969064 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 209 8.44e-50   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g12823 i0 88.439 21.6741573033708 173 20 97 0 6 178 2711 2539 Luteolibacter sp. SL250 chromosome blastn 3858 209 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
15902068 15902068 PRJNA627467_P_NODE_13333_length_176_cov_2.913386_g13264_i0 PRJNA627467 13333 176 2.913386 5.12755936 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 191 3.02e-44   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g13264 i0 87.006 61.875 177 13 98 7 4 175 3047994 3047823 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 10890 191 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
17177122 17177122 PRJNA627467_P_NODE_19194_length_161_cov_1.785714_g19125_i0 PRJNA627467 19194 161 1.785714 2.87499954 Pedosphaera parvula 1032527 Bacteria Bacteria 182 1.64e-41   NTclustered gi|183579829|emb|AM905426.1| 320771 g19125 i0 90 13.944099378882 140 14 87 0 18 157 2372 2233 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 2245 182 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;