RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA627467" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA627467 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13904765 13904765 PRJNA627467_P_NODE_19091_length_161_cov_2.812500_g19022_i0 PRJNA627467 19091 161 2.8125 4.528125 Thermomicrobium 499 Bacteria Bacteria 73.1 1.03e-8   NTclustered gi|507148389|ref|NR_103192.1| 500 g19022 i0 76.259 6.16770186335404 139 31 86 2 11 148 385 522 Thermomicrobium roseum strain DSM 5159 23S ribosomal RNA gene, complete sequence blastn 993 73.1 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum
19725813 19725813 PRJNA627467_P_NODE_316_length_557_cov_4.460630_g254_i0 PRJNA627467 316 557 4.46063 24.8457091 Thermomicrobium roseum 500 Bacteria Bacteria 130 2.46e-25   NTclustered gi|221157271|gb|CP001276.1| 309801 g254 i0 91.579 36.705565529623 95 7 17 1 167 260 535792 535698 Thermomicrobium roseum DSM 5159 plasmid, complete sequence blastn 20445 130 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;