RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA627467" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA627467 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2426205 2426205 PRJNA627467_P_NODE_902_length_378_cov_4.787234_g835_i0 PRJNA627467 902 378 4.787234 18.09574452 Pseudomonadati 3379134 Bacteria Bacteria 484 2.9999999999999993e-132   NTclustered gi|2045533567|gb|CP074693.1| 35554 g835 i0 99.623 50.6031746031746 265 1 80 0 114 378 81527 81791 Geobacter sulfurreducens strain YM35 chromosome, complete genome blastn 19128 484 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
7528642 7528642 PRJNA627467_P_NODE_20486_length_156_cov_3.074766_g20417_i0 PRJNA627467 20486 156 3.074766 4.79663496 Geobacter 28231 Bacteria Bacteria 60.2 7.68e-5   NTclustered gi|470477521|ref|NR_076389.1| 28232 g20417 i0 100 0.615384615384615 32 0 21 0 17 48 1184 1215 Geobacter metallireducens strain GS-15 23S ribosomal RNA gene, complete sequence blastn 96 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter metallireducens
8252329 8252329 PRJNA627467_P_NODE_17587_length_164_cov_2.878261_g17518_i0 PRJNA627467 17587 164 2.878261 4.72034804 Desulfonema limicola 45656 Bacteria Bacteria 241 2.72e-59   NTclustered gi|2007129425|gb|CP061799.1| 45656 g17518 i0 94.268 163.310975609756 157 9 98 0 5 161 1685519 1685675 Desulfonema limicola strain 5ac10 chromosome, complete genome blastn 26783 241 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema limicola
21552617 21552617 PRJNA627467_P_NODE_10577_length_185_cov_6.227941_g10508_i0 PRJNA627467 10577 185 6.227941 11.52169085 Pseudomonadati 3379134 Bacteria Bacteria 326 8.430000000000001e-85   NTclustered gi|2045533567|gb|CP074693.1| 35554 g10508 i0 99.441 54.0432432432432 179 1 97 0 5 183 81563 81385 Geobacter sulfurreducens strain YM35 chromosome, complete genome blastn 9998 326 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;