RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA627467" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA627467 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3149975 3149975 PRJNA627467_P_NODE_11883_length_181_cov_2.545455_g11814_i0 PRJNA627467 11883 181 2.545455 4.60727355 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 200 5.19e-47   NTclustered gi|2651357791|gb|PP174306.1| 41631 g11814 i0 87.079 32.0773480662983 178 21 98 2 4 181 3687 3862 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5806 200 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
24102633 24102633 PRJNA627467_P_NODE_17199_length_165_cov_1.750000_g17130_i0 PRJNA627467 17199 165 1.75 2.8875 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 259 7.57e-65   NTclustered gi|2735011|gb|U82204.1|BTU82204 55726 g17130 i0 95.679 98.9030303030303 162 6 98 1 1 162 344 184 Bursaria truncatella small subunit ribosomal RNA gene, complete cds blastn 16319 259 1 Eukaryota Sar   Ciliophora Colpodea Bursariomorphida Bursariidae Bursaria Bursaria truncatella

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;