RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA627467" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA627467 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6977634 6977634 PRJNA627467_P_NODE_18446_length_163_cov_0.894737_g18377_i0 PRJNA627467 18446 163 0.894737 1.45842131 Peredibacter starrii 28202 Bacteria Bacteria 226 7.559999999999997e-55   NTclustered gi|2631252187|gb|CP139487.1| 28202 g18377 i0 91.925 145.717791411043 161 13 99 0 3 163 512251 512411 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 23752 226 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
12629977 12629977 PRJNA627467_P_NODE_6930_length_256_cov_3.231884_g6861_i0 PRJNA627467 6930 256 3.231884 8.27362304 Bacteriovorax 146784 Bacteria Bacteria 436 5.5e-118   NTclustered gi|1700689994|gb|CP030035.1| 960 g6861 i0 98.016 184.78125 252 4 98 1 5 256 1660424 1660674 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 47304 436 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
19725780 19725780 PRJNA627467_P_NODE_20076_length_158_cov_2.605505_g20007_i0 PRJNA627467 20076 158 2.605505 4.1166979 Peredibacter starrii 28202 Bacteria Bacteria 250 4.31e-62   NTclustered gi|2631252187|gb|CP139487.1| 28202 g20007 i0 96.078 102.689873417722 153 6 97 0 1 153 512142 511990 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 16225 250 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;