RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA627467" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA627467 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4426869 4426869 PRJNA627467_P_NODE_3524_length_316_cov_2.018727_g3456_i0 PRJNA627467 3524 316 2.018727 6.37917732 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 141 6.14e-29   NTclustered gi|2874254056|emb|OY970380.1| 2651171 g3456 i0 92.857 0.623417721518987 98 5 31 2 4 100 3549857 3549761 MAG: Thermoanaerobaculia bacterium isolate MFD05537.bin.c.2 genome assembly, chromosome: 1 blastn 197 141 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
19725762 19725762 PRJNA627467_P_NODE_18376_length_163_cov_0.894737_g18307_i0 PRJNA627467 18376 163 0.894737 1.45842131 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 254 3.47e-63   NTclustered gi|2874254057|emb|OY970381.1| 194844 g18307 i0 95.031 22.0490797546012 161 8 99 0 1 161 1656955 1657115 MAG: uncultured Acidobacteriaceae bacterium isolate MFD04580.bin.1.19 genome assembly, chromosome: 1 blastn 3594 254 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
25377118 25377118 PRJNA627467_P_NODE_15700_length_168_cov_4.285714_g15631_i0 PRJNA627467 15700 168 4.285714 7.19999952 Bacteria 2 Bacteria Bacteria 171 3.73e-38   NTclustered gi|217038918|gb|EU811009.1| 171953 g15631 i0 85.629 4.78571428571429 167 19 98 4 1 164 276 112 Uncultured Acidobacteria bacterium clone 01QCX 23S ribosomal RNA gene, partial sequence blastn 804 171 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;