RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA624323" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA624323 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10078670 10078670 PRJNA624323_P_NODE_5388_length_312_cov_2.782427_g5226_i0 PRJNA624323 5388 312 2.782427 8.68117224 Halobacterium 2239 Archaea Archaea 577 3.89e-160   NTclustered gi|972818412|dbj|LC028258.1| 1615923 g5226 i0 100 100.00641025641 312 0 100 0 1 312 740 429 Halobacterium sp. KeS-13 gene for 16S ribosomal RNA, partial sequence blastn 31202 577 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. KeS-13
10078673 10078673 PRJNA624323_P_NODE_5748_length_301_cov_1.535088_g5586_i0 PRJNA624323 5748 301 1.535088 4.62061488 Halococcus 2249 Archaea Archaea 507 4.97e-139   NTclustered gi|2221492933|gb|CP095007.1| 179637 g5586 i0 97.01 140.514950166113 301 9 100 0 1 301 130002 129702 Halococcus dombrowskii strain H4 plasmid unnamed2, complete sequence blastn 42295 507 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
11353577 11353577 PRJNA624323_P_NODE_6169_length_289_cov_2.305556_g6007_i0 PRJNA624323 6169 289 2.305556 6.66305684 Halobacteriales 2235 Archaea Archaea 527 3.65e-145   NTclustered gi|645321606|ref|NR_118532.1| 1264579 g6007 i0 99.653 99.6505190311419 288 1 99 0 1 288 148 435 Halococcus sediminicola strain CBA1101 16S ribosomal RNA, partial sequence blastn 28799 527 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus sediminicola
12629183 12629183 PRJNA624323_P_NODE_4550_length_341_cov_1.205224_g4388_i0 PRJNA624323 4550 341 1.205224 4.10981384 Halococcus 2249 Archaea Archaea 558 1.56e-154   NTclustered gi|2221492933|gb|CP095007.1| 179637 g4388 i0 96.188 160.621700879765 341 13 100 0 1 341 129626 129286 Halococcus dombrowskii strain H4 plasmid unnamed2, complete sequence blastn 54772 558 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;