RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA624323" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA624323 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9524730 9524730 PRJNA624323_P_NODE_6148_length_290_cov_1.290323_g5986_i0 PRJNA624323 6148 290 1.290323 3.7419367 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 370 6.53e-98   NTclustered gi|2874253811|emb|OY969795.1| 464461 g5986 i0 89.965 216.848275862069 289 25 99 4 1 287 652759 652473 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 62886 370 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
11353590 11353590 PRJNA624323_P_NODE_889_length_748_cov_1.946667_g743_i0 PRJNA624323 889 748 1.946667 14.56106916 Candidatus Protochlamydia 282132 Bacteria Bacteria 1243 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g743 i0 96.658 110.494652406417 748 25 100 0 1 748 2474487 2475234 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 82650 1243 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
14625291 14625291 PRJNA624323_P_NODE_6092_length_291_cov_2.403670_g5930_i0 PRJNA624323 6092 291 2.40367 6.9946797 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 531 2.84e-146   NTclustered gi|971146634|emb|LN879502.1| 389348 g5930 i0 99.655 131.536082474227 290 1 99 0 1 290 1250105 1250394 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 38277 531 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;