RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA624323" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA624323 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2425372 2425372 PRJNA624323_P_NODE_1222_length_652_cov_7.732297_g1068_i0 PRJNA624323 1222 652 7.732297 50.41457644 Cetobacterium 180162 Bacteria Bacteria 1166 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g1068 i0 98.926 495.746932515337 652 7 100 0 1 652 279439 278788 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 323227 1166 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
2425388 2425388 PRJNA624323_P_NODE_6602_length_278_cov_2.487805_g6440_i0 PRJNA624323 6602 278 2.487805 6.9160979 Cetobacterium 180162 Bacteria Bacteria 475 1.2799999999999997e-129   NTclustered gi|2865368125|gb|CP122294.1| 188913 g6440 i0 97.482 472.172661870504 278 7 100 0 1 278 279678 279401 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 131264 475 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
3147224 3147224 PRJNA624323_P_NODE_2663_length_452_cov_6.395778_g2502_i0 PRJNA624323 2663 452 6.395778 28.90891656 Cetobacterium somerae 188913 Bacteria Bacteria 789 0   NTclustered gi|2666488225|gb|CP143319.1| 188913 g2502 i0 98.23 458.276548672566 452 7 100 1 1 452 1318971 1318521 Cetobacterium somerae strain ceto chromosome, complete genome blastn 207141 789 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
11353564 11353564 PRJNA624323_P_NODE_3849_length_374_cov_2.355482_g3687_i0 PRJNA624323 3849 374 2.355482 8.80950268 Fusobacterium 848 Bacteria Bacteria 686 0   NTclustered gi|2704983719|gb|CP077132.1| 851 g3687 i0 99.733 498.542780748663 374 1 100 0 1 374 92774 93147 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 186455 686 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
12075734 12075734 PRJNA624323_P_NODE_7730_length_255_cov_1.219780_g7568_i0 PRJNA624323 7730 255 1.21978 3.110439 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 460 3.25e-125   NTclustered gi|922689899|gb|CP012410.1| 712357 g7568 i0 99.216 426.811764705882 255 2 100 0 1 255 54052 53798 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 108837 460 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
13350572 13350572 PRJNA624323_P_NODE_8971_length_244_cov_3.514620_g8809_i0 PRJNA624323 8971 244 3.51462 8.5756728 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 440 4.019999999999999e-119   NTclustered gi|922689899|gb|CP012410.1| 712357 g8809 i0 99.18 420.815573770492 244 2 100 0 1 244 52570 52813 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 102679 440 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
16452948 16452948 PRJNA624323_P_NODE_5613_length_305_cov_1.594828_g5451_i0 PRJNA624323 5613 305 1.594828 4.8642254 Fusobacterium 848 Bacteria Bacteria 553 6.39e-153   NTclustered gi|2705020071|gb|CP084132.1| 851 g5451 i0 99.669 477.744262295082 302 1 99 0 1 302 107620 107921 Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome blastn 145712 558 0.991039426523297 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;