RNAquarium Metadata Server
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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA615351 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
595631 595631 PRJNA615351_P_NODE_168141_length_167_cov_1.818182_g154041_i0 PRJNA615351 168141 167 1.818182 3.03636394 uncultured Ruficoccus sp. 2175960 Bacteria Bacteria 54.7 0.004   NTclustered gi|2907625958|emb|OZ223518.1| 2175960 g154041 i0 100 0.173652694610778 29 0 17 0 28 56 38626 38654 MAG: uncultured Ruficoccus sp. isolate b2a3d85c-2e17-47e2-9e32-7ac6437316b9 genome assembly, chromosome: 47 blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Ruficoccus uncultured Ruficoccus sp.
595981 595981 PRJNA615351_P_NODE_88521_length_373_cov_3.195266_g74444_i0 PRJNA615351 88521 373 3.195266 11.91834218 Verrucomicrobium spinosum 2736 Bacteria Bacteria 379 1.43e-100   NTclustered gi|12583973|gb|AF245377.1| 240016 g74444 i0 85.955 467.02144772118 356 48 95 2 18 373 1473 1120 Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence blastn 174199 379 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
1149929 1149929 PRJNA615351_P_NODE_122961_length_242_cov_3.400966_g108861_i0 PRJNA615351 122961 242 3.400966 8.23033772 Verrucomicrobiaceae 203557 Bacteria Bacteria 300 7.05e-77   NTclustered gi|183579826|emb|AM905423.1| 48465 g108861 i0 90.749 260.487603305785 227 18 93 2 9 234 876 1100 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 63038 300 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
8248759 8248759 PRJNA615351_P_NODE_158567_length_178_cov_2.307692_g144467_i0 PRJNA615351 158567 178 2.307692 4.10769176 Luteolibacter sp. AS25 3135776 Bacteria Bacteria 278 2.28e-70   NTclustered gi|2889346039|gb|CP151837.1| 3135776 g144467 i0 94.915 139.23595505618 177 9 99 0 2 178 454480 454656 Luteolibacter sp. AS25 chromosome, complete genome blastn 24784 278 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. AS25
8248837 8248837 PRJNA615351_P_NODE_183827_length_153_cov_1.016949_g169727_i0 PRJNA615351 183827 153 1.016949 1.55593197 Verrucomicrobia bacterium IMCC26134 1637999 Bacteria Bacteria 141 2.6e-29   NTclustered gi|807238858|gb|CP011265.1| 1637999 g169727 i0 83.553 6.52287581699346 152 23 99 2 3 153 1902875 1903025 Verrucomicrobia bacterium IMCC26134, complete genome blastn 998 141 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
8802888 8802888 PRJNA615351_P_NODE_184747_length_152_cov_1.367521_g170647_i0 PRJNA615351 184747 152 1.367521 2.07863192 Prosthecobacter 48463 Bacteria Bacteria 204 3.2399999999999996e-48   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g170647 i0 90.789 20.9342105263158 152 14 100 0 1 152 1266 1417 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 3182 204 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
12074834 12074834 PRJNA615351_P_NODE_129490_length_227_cov_1.656250_g115390_i0 PRJNA615351 129490 227 1.65625 3.7596875 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 364 2.289999999999999e-96   NTclustered gi|2874254065|emb|OY970130.1| 412056 g115390 i0 95.595 85.1189427312775 227 10 100 0 1 227 5153589 5153363 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 19322 364 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
12074985 12074985 PRJNA615351_P_NODE_183510_length_153_cov_1.355932_g169410_i0 PRJNA615351 183510 153 1.355932 2.07457596 Prosthecobacter fusiformis 48464 Bacteria Bacteria 219 1.1699999999999999e-52   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g169410 i0 92.763 31.3725490196078 152 9 99 2 1 151 494 344 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 4800 219 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
13350157 13350157 PRJNA615351_P_NODE_92271_length_353_cov_10.512579_g78186_i0 PRJNA615351 92271 353 10.512579 37.10940387 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 316 1.0699999999999999e-81   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g78186 i0 83.918 268.818696883853 342 44 96 9 15 353 276757 276424 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 94893 316 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
13903944 13903944 PRJNA615351_P_NODE_68211_length_517_cov_2.417012_g54405_i0 PRJNA615351 68211 517 2.417012 12.49595204 Verrucomicrobiota 74201 Bacteria Bacteria 856 0   NTclustered gi|2874254065|emb|OY970130.1| 412056 g54405 i0 96.518 43.9555125725338 517 18 100 0 1 517 5153352 5152836 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 22725 856 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14624397 14624397 PRJNA615351_P_NODE_125632_length_236_cov_1.432836_g111532_i0 PRJNA615351 125632 236 1.432836 3.38149296 Verrucomicrobium spinosum 2736 Bacteria Bacteria 320 5.26e-83   NTclustered gi|12583973|gb|AF245377.1| 240016 g111532 i0 91.102 111.088983050847 236 19 99 2 1 235 644 878 Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence blastn 26217 320 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
14624412 14624412 PRJNA615351_P_NODE_129512_length_227_cov_1.609375_g115412_i0 PRJNA615351 129512 227 1.609375 3.65328125 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 379 8.169999999999999e-101   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g115412 i0 96.903 286.74449339207 226 7 99 0 1 226 2201 1976 Luteolibacter sp. SL250 chromosome blastn 65091 379 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
22272791 22272791 PRJNA615351_P_NODE_160578_length_176_cov_1.404255_g146478_i0 PRJNA615351 160578 176 1.404255 2.4714888 Luteolibacter sp. 1962973 Bacteria Bacteria 268 1.3499999999999999e-67   NTclustered gi|2836248208|gb|CP121322.1| 1962973 g146478 i0 94.767 265.869318181818 172 9 98 0 5 176 1008811 1008982 MAG: Luteolibacter sp. isolate NCC532_bact_1514 chromosome, complete genome blastn 46793 268 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
23548001 23548001 PRJNA615351_P_NODE_110719_length_278_cov_1.292181_g96620_i0 PRJNA615351 110719 278 1.292181 3.5922631799999998 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 243 1.41e-59   NTclustered gi|2874253952|emb|OY970277.1| 412056 g96620 i0 85.714 43.3705035971223 238 25 84 9 12 244 2749626 2749859 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 12057 243 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;