RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA615351 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4423566 4423566 PRJNA615351_P_NODE_95344_length_338_cov_4.267327_g81252_i0 PRJNA615351 95344 338 4.267327 14.42356526 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 623 5.389999999999999e-174   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g81252 i0 100 80.6538461538462 337 0 99 0 2 338 1718 1382 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 27261 623 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
6974122 6974122 PRJNA615351_P_NODE_20366_length_1449_cov_19.948373_g14792_i0 PRJNA615351 20366 1449 19.948373 289.05192477 Copromyxa protea 931554 Tubulinea other_Eukaryota 1563 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g14792 i0 87.222 25.6894409937888 1393 152 95 16 28 1398 1 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 37224 1563 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
16452761 16452761 PRJNA615351_P_NODE_166453_length_169_cov_1.492537_g152353_i0 PRJNA615351 166453 169 1.492537 2.52238753 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 99 1.79e-16   NTclustered gi|61655688|gb|AY848964.1| 318526 g152353 i0 87.209 49.7573964497041 86 11 51 0 51 136 1958 2043 Heleopera sphagni small subunit ribosomal RNA gene, partial sequence blastn 8409 100 0.99 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera sphagni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;