RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA615351 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4423173 4423173 PRJNA615351_P_NODE_160844_length_175_cov_3.650000_g146744_i0 PRJNA615351 160844 175 3.65 6.3875 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 219 1.37e-52   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g146744 i0 89.143 253.605714285714 175 19 100 0 1 175 1710603 1710777 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 44381 219 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
10799754 10799754 PRJNA615351_P_NODE_121429_length_246_cov_2.966825_g107329_i0 PRJNA615351 121429 246 2.966825 7.2983895 Smithellaceae bacterium 2964540 Bacteria Bacteria 82.4 2.83e-11   NTclustered gi|2626214512|emb|OY820932.1| 2964540 g107329 i0 87.013 14.650406504065 77 5 30 5 172 246 4484122 4484195 MAG: Smithellaceae bacterium isolate 90efb5c7-b315-4df1-98b9-9b59cc098579 genome assembly, chromosome: 1 blastn 3604 82.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium
15178437 15178437 PRJNA615351_P_NODE_70052_length_500_cov_6.509677_g56171_i0 PRJNA615351 70052 500 6.509677 32.548385 Pseudomonadati 3379134 Bacteria Bacteria 586 1.0799999999999996e-162   NTclustered gi|2893358418|emb|OZ220710.1| 2202153 g56171 i0 88.613 167.12 483 53 96 2 1 482 2288928 2288447 MAG: Thermodesulfobacteriota bacterium isolate dce1034a-8f23-488c-aa07-39e6c80a0035 genome assembly, chromosome: 1 blastn 83560 586 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;