RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA615351 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3701624 3701624 PRJNA615351_P_NODE_183603_length_153_cov_1.355932_g169503_i0 PRJNA615351 183603 153 1.355932 2.07457596 Gracilinema 2951106 Bacteria Bacteria 204 3.2699999999999995e-48   NTclustered gi|470488994|ref|NR_076899.1| 215591 g169503 i0 91.837 55.562091503268 147 11 96 1 1 147 829 684 Treponema caldarium strain H1 23S ribosomal RNA, complete sequence blastn 8501 204 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Breznakiellaceae Gracilinema Gracilinema caldarium
4423530 4423530 PRJNA615351_P_NODE_85864_length_389_cov_1.677966_g71798_i0 PRJNA615351 85864 389 1.677966 6.52728774 Treponema bryantii 163 Bacteria Bacteria 52.8 0.037   NTclustered gi|2581915939|dbj|AP025286.1| 163 g71798 i0 100 0.0719794344473008 28 0 7 0 309 336 1397620 1397593 Treponema bryantii JCM 32280 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema bryantii
12074899 12074899 PRJNA615351_P_NODE_150610_length_189_cov_1.538961_g136510_i0 PRJNA615351 150610 189 1.538961 2.90863629 Leptospira kmetyi 408139 Bacteria Bacteria 60.2 9.69e-5   NTclustered gi|1511924597|gb|CP033614.1| 408139 g136510 i0 97.143 0.185185185185185 35 1 19 0 86 120 336585 336551 Leptospira kmetyi strain LS 001/16 chromosome 1, complete sequence blastn 35 60.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira kmetyi
19722237 19722237 PRJNA615351_P_NODE_158656_length_178_cov_1.958042_g144556_i0 PRJNA615351 158656 178 1.958042 3.48531476 Spirochaetia bacterium 2053615 Bacteria Bacteria 113 6.81e-21   NTclustered gi|2621700913|emb|OY759747.1| 2053615 g144556 i0 83.871 70.3932584269663 124 14 68 6 9 129 197588 197468 MAG: Spirochaetia bacterium isolate 029c9a96-c795-42b2-9c0d-59f5314b817a genome assembly, chromosome: 1 blastn 12530 113 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;