RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 3 ✖

bioproject 1

  • PRJNA615351 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4423575 4423575 PRJNA615351_P_NODE_96604_length_333_cov_1.436242_g82509_i0 PRJNA615351 96604 333 1.436242 4.78268586 Chondrus crispus 2769 Rhodophyta other_Eukaryota 191 6.37e-44   NTclustered gi|546302504|ref|XM_005711659.1| 2769 g82509 i0 78.644 79.2312312312312 295 57 88 6 1 292 382 91 Chondrus crispus unnamed protein product (CHC_T00008003001) mRNA, complete cds blastn 26384 191 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
15898394 15898394 PRJNA615351_P_NODE_120753_length_248_cov_2.103286_g106653_i0 PRJNA615351 120753 248 2.103286 5.21614928 Rhodella violacea 2801 Rhodophyta other_Eukaryota 63.9 1.04e-5   NTclustered gi|1812772007|gb|MT117934.1| 2801 g106653 i0 100 0.137096774193548 34 0 14 0 58 91 5606 5639 Rhodella violacea strain CCMP736 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 34 63.9 1 Eukaryota     Rhodophyta Rhodellophyceae Rhodellales Rhodellaceae Rhodella Rhodella violacea
18447606 18447606 PRJNA615351_P_NODE_143135_length_201_cov_1.204819_g129035_i0 PRJNA615351 143135 201 1.204819 2.42168619 Cyanidioschyzon merolae 45157 Rhodophyta other_Eukaryota 52.8 0.017   NTclustered gi|1207901781|ref|XR_002461286.1| 280699 g129035 i0 100 0.139303482587065 28 0 14 0 156 183 1331 1358 Cyanidioschyzon merolae strain 10D hypothetical transcript miscRNA blastn 28 52.8 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;