RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA615351" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA615351 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
595549 595549 PRJNA615351_P_NODE_142781_length_201_cov_2.343373_g128681_i0 PRJNA615351 142781 201 2.343373 4.71017973 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 278 2.65e-70   NTclustered gi|575456455|gb|CP007128.1| 861299 g128681 i0 92 12.4378109452736 200 12 99 4 4 201 3043824 3043627 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 2500 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7527744 7527744 PRJNA615351_P_NODE_159406_length_177_cov_2.084507_g145306_i0 PRJNA615351 159406 177 2.084507 3.68957739 Gemmatimonadaceae 219687 Bacteria Bacteria 172 1.0999999999999999e-38   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g145306 i0 84.746 3.98870056497175 177 22 98 5 4 177 2076350 2076176 Gemmatimonas phototrophica strain AP64, complete genome blastn 706 172 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
15898683 15898683 PRJNA615351_P_NODE_38333_length_932_cov_38.131550_g2382_i4 PRJNA615351 38333 932 38.13155 355.386046 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 54.7 0.026   NTclustered gi|2874253728|emb|OY969570.1| 412054 g2382 i4 100 0.0311158798283262 29 0 3 0 564 592 155193 155165 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17173461 17173461 PRJNA615351_P_NODE_156194_length_181_cov_2.876712_g142094_i0 PRJNA615351 156194 181 2.876712 5.20684872 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 237 3.95e-58   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g142094 i0 90.659 148.546961325967 182 11 99 2 3 181 1103106 1103284 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 26887 237 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
18447869 18447869 PRJNA615351_P_NODE_49595_length_733_cov_2.467049_g37576_i0 PRJNA615351 49595 733 2.467049 18.08346917 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 640 1.2299999999999998e-178   NTclustered gi|2874253978|emb|OY970303.1| 412054 g37576 i0 83.498 136.321964529332 709 93 96 24 3 703 1903844 1903152 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 99924 640 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21551976 21551976 PRJNA615351_P_NODE_76097_length_453_cov_1.669856_g62092_i0 PRJNA615351 76097 453 1.669856 7.56444768 Gemmatimonas 173479 Bacteria Bacteria 614 4.47e-171   NTclustered gi|470475286|ref|NR_076270.1| 173480 g62092 i0 91.17 90.9050772626932 453 38 100 2 1 453 626 176 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 41180 614 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
25376356 25376356 PRJNA615351_P_NODE_170220_length_165_cov_1.707692_g156120_i0 PRJNA615351 170220 165 1.707692 2.8176918 Gemmatimonas 173479 Bacteria Bacteria 270 3.4999999999999993e-68   NTclustered gi|470475286|ref|NR_076270.1| 173480 g156120 i0 96.341 16.3030303030303 164 6 99 0 1 164 2293 2130 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 2690 270 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;